BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07410.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928417 jgi|Araly1|928417|scaffold_300874.1 1107 0.0
Ahg478060 jgi|Araly1|478060|fgenesh2_kg.3__761__AT3G07400.1 185 4e-46
> Ahg928417 jgi|Araly1|928417|scaffold_300874.1
Length=695
Score = 1107 bits (599), Expect = 0.0
Identities = 664/696 (95%), Gaps = 2/696 (0%)
Strand=Plus/Plus
Query 55 TCTCGAAGAAGTA-GAAGAAGATGGGTAAGGAAGATGACCGAGGAGAAGAGTACCTGTTC 113
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCTCGAAGAAG-ACGAAGAAGATGGGTAAGGAAGACGACCGAGGAGAAGAGTACCTGTTC 59
Query 114 AAGATTGTCCTAATCGGCGATTCCGCTGTCGGAAAATCGAACTTGCTGTCTCGATTTTCG 173
||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 60 AAGATTGTCCTGATCGGCGATTCGGCTGTCGGAAAATCGAACCTGCTGTCTCGCTTTTCT 119
Query 174 CGGGATGAGTTCGACACGAACTCAAAAGCGACAATCGGAGTGGAATTTCAGACGCAGCTG 233
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 120 CGGGACGAGTTCGACACGAACTCGAAGGCGACAATCGGAGTGGAATTTCAGACGCAGCTG 179
Query 234 GTTGAAATCGAAGGGAAAGAAGTGAAAGCTCAGATCTGGGACACTGCTGGTCAAGAGAGG 293
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGAAATCGAAGGGAAAGAAGTGAAAGCTCAGATCTGGGACACTGCTGGTCAAGAGAGG 239
Query 294 TTTAGAGCTGTCACTTCTGCTTATTACAGAGGTGCTTTTGGTGCTCTCATCGTTTATGAC 353
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTAGAGCAGTCACTTCTGCTTATTACAGAGGTGCTTTTGGTGCTCTCATCGTTTATGAC 299
Query 354 ATCACTCGAGGTGACACTTTCGAAAGCGTTAAACGTTGGCTCCAGGAACTCAACACTCAT 413
||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 ATCACCCGAAGTGACACTTTCGAAAGCGTCAAACGATGGCTCCAGGAACTCAACACTCAT 359
Query 414 TGTGACACGGCAGTGGCACAAATGCTAGTTGGGAATAAATGCGATTTGGAGGATATAAGA 473
|||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 360 TGTGACACTGCGGTGGCACAAATGCTAGTTGGAAACAAATGCGATTTGGAGGATATCAGA 419
Query 474 GCGGTGAGTGTGGAGGAAGGGAAAGCTCTTGCGGAGGAAGAAGGATTGTTCTTTATGGAA 533
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 GCGGTCAGTGTGGAGGAAGGGAAAGCTCTTGCGGAGGAAGAAGGATTGTTCTTCATGGAG 479
Query 534 ACATCGGCTCTGGACGCCACAAATGTAGACAAAGCCTTTGAGATCGTTATCAGAGAGATC 593
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 480 ACATCCGCTCTGGACGCCACAAATGTAGACAAAGCCTTTGAGATTGTCATCAGAGAGATC 539
Query 594 TTCAACAATGTCAGCCGCAAACTTCTCAACTCTGATGCTTACAAAGCAGAGCTTTCCGTT 653
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 540 TTCAACAATGTCAGCCGCAAACTTCTCAACTCTGATGCTTACAAGGCCGAGCTTTCCGTT 599
Query 654 AACCGGGTCAGCCTTGTCAACAACCAAGATGGCTCCGAGAGCTCTTGGCGGAATCCGTCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AACCGGGTCAGCCTTGTCAACAACCAAGATGGCTCCGAGAGCTCTTGGCGGAATCCGTCT 659
Query 714 TGTTGCTCCCGATGATTTCAATCAATCTTGTTTTTA 749
|| ||||||||||||||| |||||||||||||||||
Sbjct 660 TGCTGCTCCCGATGATTTAAATCAATCTTGTTTTTA 695
> Ahg478060 jgi|Araly1|478060|fgenesh2_kg.3__761__AT3G07400.1
Length=3338
Score = 185 bits (100), Expect = 4e-46
Identities = 121/130 (93%), Gaps = 6/130 (5%)
Strand=Plus/Minus
Query 768 GGTTATAATTATCATTTATGAAGTCAGACTTATAATAAGATACTTGCAATCTGTTTTGTC 827
||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||||| |
Sbjct 3338 GGTTATAATTATCATTTATGAAGTCGGAC-T-T-ATAAGATACTTGCTATCTGTTTTG-C 3283
Query 828 -TTGATACTACACATTGGTTCTGGCCGAGGGATTAAACAAAAATGACCTGACCGAATAGA 886
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 3282 GTTGATACTACACATTGGTTCTGGCCGAGGGATTAAACAAAA-TGACCTGACCGAATCGA 3224
Query 887 GAAAATGGCG 896
||||||||||
Sbjct 3223 GAAAATGGCG 3214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5