BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07425.1

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928419 jgi|Araly1|928419|scaffold_300876.1                        490    4e-138


> Ahg928419 jgi|Araly1|928419|scaffold_300876.1
Length=337

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 301/318 (95%), Gaps = 3/318 (1%)
 Strand=Plus/Plus

Query  1    ATGGTAAGAAGAAACGCAGTTCATGCCATGTCAAGTCTTCCGTCAAGGTCCTGGTGGCCG  60
            ||||||||||||| | ||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct  21   ATGGTAAGAAGAAGCACAGTTCATGCCATTTCAAGTCTTCCGTCGAGGTACTGGTGGCCG  80

Query  61   CAACAACGAAGGAAAGGAAAACGAGTCGTCGTGCGGTTAGGAAACCGGCGACGAGGGTT-  119
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  81   CAGCAACGAAGGAAAGGAAAACGAGTCGTCGTGCGGTTAGGTAACCGGCGACGAGGGTTC  140

Query  120  TTTGGTGGGGCCACCGCGGATGGTTATGCAGAGATGGAGGATGAACATGGGAAAGCCGAT  179
            ||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||
Sbjct  141  TTT-GTGGGGCCACCGCGGATGGTGGTGCAGAGATGGAGGATGAACATCGGAAAGCCGAT  199

Query  180  GAAGATGATGAGAAGTATCATTTTGGGGATACTCTCAAATGGTGGAAATGTTAAGTTCTT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  GAAGATGATGAGAAGTATCATTTTGGGGATACTCTCAAATGGTGGAAATGTTAAGTTCTT  259

Query  240  AGATGCTTACCTTTGGTCTTTACCAATCTTACGTCCTCACTTGTTTCCACTGTGTTGATT  299
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  260  AGATGCTTATCTTTGGTCTTTACCAATCTTACGTCCTCAGTTGTTTCCACTATGTTGATT  319

Query  300  T-TTGTAATACCAATTTC  316
            | |||| |||||||||||
Sbjct  320  TGTTGTGATACCAATTTC  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16483214448


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5