BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07430.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478063 jgi|Araly1|478063|fgenesh2_kg.3__764__AT3G07430.1 1051 0.0
> Ahg478063 jgi|Araly1|478063|fgenesh2_kg.3__764__AT3G07430.1
Length=855
Score = 1051 bits (569), Expect = 0.0
Identities = 708/772 (92%), Gaps = 22/772 (3%)
Strand=Plus/Plus
Query 1 ATATCTGAAAGACTCAAAAACCTATCGTCATTTATCTTCAACAGGCGGAATAACGGAGAT 60
|||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATATCTAAAAGACTC-AAAACCTATCGTCA-TTATCTTCAACAGGCGGAGGAACGGAGAT 58
Query 61 GGCCGCCATTACAGCTCTCACTCTCCGCTCTCCTGTTTATC-T-C-CCATCATCTGCCAC 117
||||||||||||||| ||| |||||||||||||||||| || | | |||||||| |||||
Sbjct 59 GGCCGCCATTACAGCACTCGCTCTCCGCTCTCCTGTTTTTCTTCCTCCATCATCCGCCAC 118
Query 118 AAGCCCTAGATTCCATGGCTTCACCAATCAACCACCACCAGCTCGTCTCTTCTTTCCTCT 177
|| |||||||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct 119 AACCCCTAGATTCCATGGCTTCA-C---CAA--GCTACCAGCTCGTCTCTTCTTTCCTCT 172
Query 178 TAACCCCTTCCCTTCTCTATCAATCCAAAA-CC-----CTAAATCCATCCGAATTTCCGC 231
||| ||||||||||| ||||| |||||||| || ||||||||||||||||||||||
Sbjct 173 TAAACCCTTCCCTTCCCTATCCATCCAAAACCCTAAATCTAAATCCATCCGAATTTCCGC 232
Query 232 ATCCGCTTCGCCGATAACAACACCAATCC-TCCAGACGGAGAAGTCAACAGCTCGGTCAT 290
|||||| |||||||| ||||||| || ||| ||||||||| |||||| |||| |||
Sbjct 233 ATCCGCATCGCCGAT---GACACCAA-CCATCCCGACGGAGAAATCAACAACTCGACCAT 288
Query 291 CGACACTCACCGGGTCCACTCGGTCTCTCGCTACTCTCGCGGCTTTAGCAATCGCTGTAA 350
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 289 CGACACTCACCGGGTCGACTCGGTCTCTCGCTACTCTCGCGGCTTTAACAATCGCTGTAA 348
Query 351 CCAGAGTCCTAGCTCAGAAACTCTCTCTCGCAATCCAGACTTCAAGTCCCGTAATCGCCG 410
|||||||| ||||||||||||||||||| || ||||||| ||||||||||| |||||| |
Sbjct 349 CCAGAGTCTTAGCTCAGAAACTCTCTCTTGCGATCCAGATTTCAAGTCCCGCAATCGCAG 408
Query 411 ACGGGTTACGATTCTCTCTCAGTACCGCCGGACCTGTCTTCTTCGCGTCTCTCCGGGATC 470
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 409 ACGGATTACGATTCTCTCTCAGTACCGCCGGACCGGTCTTCTTCGCGTCGCTCCGGGATC 468
Query 471 GTCCTCCGGGATACTTGAACACGCCGCTGACGGTTGTTGCGGTGGGGATAAAGAAGTGGC 530
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 469 GTCCTCCGGGATACTTGAACACGCCGCTTACGGTGGTTGCGGTGGGGATAAAGAAGTGGT 528
Query 531 TAGACATTTACAGTGGGGTATTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCTAATATCC 590
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 529 TAGACATATACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCTAATATCC 588
Query 591 CTTGGGAAAGACAGCCTTTGTCTGCCATTAGAGATCTCTGTGATCCTTACTTGAATCTCT 650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 589 CTTGGGAAAGACAGCCTTTGTCTGCCATTAGAGATCTATGTGATCCTTACTTGAATCTCT 648
Query 651 TCAGAAACATCATTCCTCCTATCTTCGATACGCTTGATGTTAGTCCATTGCTTGCTTTCG 710
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 649 TCAGAAACATCATTCCTCCTATCTTCGATACTCTTGATGTTAGTCCATTGCTTGCTTTCG 708
Query 711 CGGTTCTTGGTACACTTGGATCGATTGTTCATGGCAGCACTGGGTAGAAATT 762
|||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 709 CGGTTCTTGGTACACTTGGATCTATTGTTCATGGCAGCACCGGATAGAAATT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5