BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07440.1 Length=1008 Score E Sequences producing significant alignments: (Bits) Value Ahg928421 jgi|Araly1|928421|scaffold_300878.1 1173 0.0 > Ahg928421 jgi|Araly1|928421|scaffold_300878.1 Length=748 Score = 1173 bits (635), Expect = 0.0 Identities = 707/742 (95%), Gaps = 3/742 (0%) Strand=Plus/Plus Query 59 CCGCCGGAAAACCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 118 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 CCGCCGGGAACCCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 64 Query 119 ACGTCACGGCGGC-GTTTCCCAGATTCGACTCGCGAGAACAGAGGCAGGTCAGCCGAGAC 177 |||||||||| || |||||||| || || || || ||||||||| ||||||||||||||| Sbjct 65 ACGTCACGGC-GCAGTTTCCCAAATCCGGCTAGCCAGAACAGAGACAGGTCAGCCGAGAC 123 Query 178 GGCGAAACAAGTTGCCTTCTCTTCCGCTAAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 237 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 124 GGCGAAACAAGTTGCCTTCTCTTCCGCTCAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 183 Query 238 TAGTAGACGGAGAGATGCACGAGATCGGTGATCACGTCCCTCCTCGTGAGCGTTTCACAA 297 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 184 TAGTCGACGGAGAGATGCACGAGATCGGCGATCACGTCCCTCCTCGTGAGCGGTTCACAA 243 Query 298 TCCCCAGGGACAACATTCCGAACAAACGCCGTAAGCAGCTCCGTGACCAGTTCATGCGCC 357 ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 244 TCCCCAGGGACAACATTCCAAACAAACGCCGGAAGCAGCTCCGTGAGCAGTTCATGCGCC 303 Query 358 GCACTCGCCTCGTCCTTAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 417 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GCACTCGTCTCGTCCTGAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 363 Query 418 TATATAACGAGCTTAGAGAAAACTGGGAGAGGCTTTATTGGGATGAAGGGTATTCAAAGA 477 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 364 TATATAACGAGCTTAGAGAGAACTGGGAGAGGCTTTATTGGGATGAAGGATATTCAAAGA 423 Query 478 AACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATC 537 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 424 AAATCGCAAGTGATCATGCAAATTATGAATCTGCTGAAGAAGACGATGAAGATTTTAATC 483 Query 538 CATACAGGAACAGGCGGTCTTTCAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 597 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 484 CATACAGGAACAGGCGGTCTTACAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 543 Query 598 CACAAGGTGATAATTGGGAGAAAGTCAGTCAAATCAGGGATAAGTTTGAGTATGATAGAG 657 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 544 CACAAGGTGATAATTGGGAGAAAGTCAATCAAATCAGGGATAAGTTTGAGTATGATAGAG 603 Query 658 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAAT 717 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 604 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGCCTCTCAAGAAT 663 Query 718 CTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGG 777 |||||||||| ||||||||||||||||||||||| |||||| |||| |||||| |||||| Sbjct 664 CTAGGGACTTAAATTGGAATGCACAAAGACGGCCTTTTGATGCTGAGAGATTCACAAGGG 723 Query 778 ATTGAATACCCTTAACATCACA 799 ||||||||| | ||||||||| Sbjct 724 ATTGAATACG-TAAACATCACA 744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474827411 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5