BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07440.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928421 jgi|Araly1|928421|scaffold_300878.1 1173 0.0
> Ahg928421 jgi|Araly1|928421|scaffold_300878.1
Length=748
Score = 1173 bits (635), Expect = 0.0
Identities = 707/742 (95%), Gaps = 3/742 (0%)
Strand=Plus/Plus
Query 59 CCGCCGGAAAACCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 118
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CCGCCGGGAACCCGCCATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGAT 64
Query 119 ACGTCACGGCGGC-GTTTCCCAGATTCGACTCGCGAGAACAGAGGCAGGTCAGCCGAGAC 177
|||||||||| || |||||||| || || || || ||||||||| |||||||||||||||
Sbjct 65 ACGTCACGGC-GCAGTTTCCCAAATCCGGCTAGCCAGAACAGAGACAGGTCAGCCGAGAC 123
Query 178 GGCGAAACAAGTTGCCTTCTCTTCCGCTAAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 237
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 GGCGAAACAAGTTGCCTTCTCTTCCGCTCAAGAAGAAGGAAGAGAAATCCGAGTGGTGGA 183
Query 238 TAGTAGACGGAGAGATGCACGAGATCGGTGATCACGTCCCTCCTCGTGAGCGTTTCACAA 297
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 184 TAGTCGACGGAGAGATGCACGAGATCGGCGATCACGTCCCTCCTCGTGAGCGGTTCACAA 243
Query 298 TCCCCAGGGACAACATTCCGAACAAACGCCGTAAGCAGCTCCGTGACCAGTTCATGCGCC 357
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 244 TCCCCAGGGACAACATTCCAAACAAACGCCGGAAGCAGCTCCGTGAGCAGTTCATGCGCC 303
Query 358 GCACTCGCCTCGTCCTTAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 417
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCACTCGTCTCGTCCTGAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAAC 363
Query 418 TATATAACGAGCTTAGAGAAAACTGGGAGAGGCTTTATTGGGATGAAGGGTATTCAAAGA 477
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 364 TATATAACGAGCTTAGAGAGAACTGGGAGAGGCTTTATTGGGATGAAGGATATTCAAAGA 423
Query 478 AACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATC 537
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 424 AAATCGCAAGTGATCATGCAAATTATGAATCTGCTGAAGAAGACGATGAAGATTTTAATC 483
Query 538 CATACAGGAACAGGCGGTCTTTCAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 597
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 484 CATACAGGAACAGGCGGTCTTACAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTA 543
Query 598 CACAAGGTGATAATTGGGAGAAAGTCAGTCAAATCAGGGATAAGTTTGAGTATGATAGAG 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 544 CACAAGGTGATAATTGGGAGAAAGTCAATCAAATCAGGGATAAGTTTGAGTATGATAGAG 603
Query 658 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAAT 717
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 604 AAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGCCTCTCAAGAAT 663
Query 718 CTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGG 777
|||||||||| ||||||||||||||||||||||| |||||| |||| |||||| ||||||
Sbjct 664 CTAGGGACTTAAATTGGAATGCACAAAGACGGCCTTTTGATGCTGAGAGATTCACAAGGG 723
Query 778 ATTGAATACCCTTAACATCACA 799
||||||||| | |||||||||
Sbjct 724 ATTGAATACG-TAAACATCACA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5