BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07450.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928423 jgi|Araly1|928423|scaffold_300880.1                        544    2e-154


> Ahg928423 jgi|Araly1|928423|scaffold_300880.1
Length=365

 Score =  544 bits (294),  Expect = 2e-154
 Identities = 312/321 (97%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGATTGTAATGAAAAAGAGTCAGGTTTTTACAGTGATGTTACTTATGGTTATGGTCCAG  60
            |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct  25   ATGATTTTAATGAAAAAGATTCAGGTTTTTACAGTGATGTTACTTATAGTTATGGTCCAG  84

Query  61   TCAGGTCTGGTGAGAGAGACGCTGGGACACCCATGTGGTCGTACATTTTTGTCGGCTTTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   TCAGGTCTGGTGAGAGAGACGCTGGGACACCCATGTGGTCGTACATTTTTGTCGGCTTTG  144

Query  121  ATTCAGCTAGTGCCGTGTAGACCATCAGTGGCTCCGTTTAGCACATTGCCTCCGAACGGG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  145  ATTCAGCTAGTGCCGTGTAGACCATCAGTGGCTCCGTTTAGCACATTGCCTCCGAACAAG  204

Query  181  CTATGTTGCGCTGCCATCAAGACACTTGGTCAACCTTGTTTATGCGTTCTTGCCAAGGGA  240
            |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  205  CTATGTTGCGCTGCTATCAAGATACTTGGTCAACCTTGTCTATGCGTTCTTGCCAAGGGA  264

Query  241  CCACCCATCGTTGGCGTTGACCGGACCCTCGCTCTCCATTTACCTGGAAAATGTTCTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  CCACCCATCGTTGGCGTTGACCGGACCCTCGCTCTCCATTTACCTGGAAAATGTTCTGCC  324

Query  301  AATTTTCTTCCATGTAATTAA  321
            ||||||| |||||||||||||
Sbjct  325  AATTTTCCTCCATGTAATTAA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5