BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07460.2
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478064 jgi|Araly1|478064|fgenesh2_kg.3__765__AT3G07460.2 1003 0.0
Ahg478066 jgi|Araly1|478066|fgenesh2_kg.3__767__AT3G07470.1 508 2e-143
Ahg947222 jgi|Araly1|947222|scaffold_703451.1 399 1e-110
> Ahg478064 jgi|Araly1|478064|fgenesh2_kg.3__765__AT3G07460.2
Length=816
Score = 1003 bits (543), Expect = 0.0
Identities = 659/712 (93%), Gaps = 20/712 (3%)
Strand=Plus/Plus
Query 1 ATAAAAATGTCGTCTTCTTCTTCTTCCTCGCTTAAACCCATTAATTCAATTTCTTCATAG 60
||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1 ATAAAAATGTCGTCTTCTTCTTCTTCCTCGCTTAAACCC----ATT-AA----TTCATAG 51
Query 61 CCAGCAATAAGATCTGGCAAATTAAACCATTCCACTATGCTTCGTATAGTTCAAATCACG 120
||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||| ||
Sbjct 52 CCAGCAACGAGATCTGGCAAATTCTACCATTCTACTATGCTTCGTGTAGTTCAAATCGCG 111
Query 121 CTTCTTTGTTTCGTTCTCGCCGCCGGGATCTCGATCTCCGCCGTGATCGCCGAGAATGAA 180
|||||||||||||||||||||||| |||||||||||| | ||||||||| |||
Sbjct 112 CTTCTTTGTTTCGTTCTCGCCGCCAGGATCTCGATCT----C-----CGCCGAGAACGAA 162
Query 181 TCTATAGACGAGATCCTTCTAGCGAATGGATTACCTTTGGGGCTATTTCCTAAAGGCGTG 240
|||||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| |||
Sbjct 163 TCTATAGACGAGATCCTTCTGGCGAACGGATTGCCTTTGGGGATATTTCCGAAAGGTGTG 222
Query 241 AAAGGATTTACCGTTAATGGCGAAACGGGACGGTTCTCGGTTTATTTGAATCAGTCATGC 300
|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 223 AAAGGATTCAGCGTTAATGGCGAAACGGGACGGTTCTCGGTTTATTTGAACCAGTCATGC 282
Query 301 CAGGCTAAGTATGAGACAGAGCTGCATTACGATGAGATTGTTTCGGGAACGATAGGTTAT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 283 CAGGCTAAGTATGAGACAGAGCTGCATTACGACGAGATTGTTTCGGGAACGATAGGTTAT 342
Query 361 GCTCAAATCAGGGATTTATCGGGAATCTCAGCGCAAGAGCTGTTCTTGTGGTTACAGGTG 420
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 343 GCTCAAATCGGGGATTTGTCGGGAATCTCAGCGCAAGAGCTGTTCTTGTGGTTTCCGGTT 402
Query 421 AAAGGAATCCGAGTCGACGTGCCTAGCTCTGGTCTTATATTCTTCGACGTTGGTGTTCTT 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 403 AAAGGAATCCGAGTCGACGTGCCGAGCTCTGGTCTTATATTCTTCGACGTTGGTGTTCTT 462
Query 481 CGCAAGCAATACTCTTTGTCTTTGTTCGAGACACCAAGAGATTGTGTCGCGGTTCGTGGC 540
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 463 CGCAAGCAGTACTCTTTGTCTTTGTTCGAGACACCGAGAGATTGTGTTGCGGTTCGTAGC 522
Query 541 GATGCCGAGTTTATTGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCT 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GATGCTGAGTTTATTGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCT 582
Query 601 TGGAAGAAACACTGTTTAGCAGGAGTTGAAGAAATGTTGTTATACTATACGAGAAAGATG 660
||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 583 TGGAAGAAATACTGTTTAGCAGGAGTTTAAGAAATGTTGTTATACTATACCAGAAAGATG 642
Query 661 GAAAAGATAGATAGATGCTCTCATCTATTCTTGAAGATACTTTCTACT-GTT 711
|||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 643 GAAAAGATAGATAGATGCTCTCATCTATTCTTGAAGATACTT-CTACTTGTT 693
Score = 159 bits (86), Expect = 3e-38
Identities = 101/108 (94%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 777 TGTTGTTTCTGCATTGCTTTCTCCAGATTGCGAG-GGTGACAGAACCGAGAGAATCTGTG 835
|||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct 690 TGTTGTTTCTGCATTGCTTTCTCCAGATTGCGTGCGG-GACAGAACCGAGAGAATATGTG 748
Query 836 AGCGGAAGTTAGACGGTAACAACGATGTCAGGATTGGTTTGGAAAAGA 883
||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 749 AGCGGAAGTTAGACGGTAACAACAATGTCAGGGTTGGTTCGGAAAAGA 796
> Ahg478066 jgi|Araly1|478066|fgenesh2_kg.3__767__AT3G07470.1
Length=985
Score = 508 bits (275), Expect = 2e-143
Identities = 604/753 (80%), Gaps = 61/753 (8%)
Strand=Plus/Plus
Query 97 ATGCTTCGTATAGTTCAAATCACGCTTCTTTGTTTCGTTCTCGCCGCCGGGATCTCGATC 156
||||||||||| ||||||||| || |||| ||| ||||||||| ||||||||||||||||
Sbjct 107 ATGCTTCGTATTGTTCAAATCGCGTTTCTGTGTCTCGTTCTCGTCGCCGGGATCTCGATC 166
Query 157 TCCGCCGTGATCGCCGAGAATGA-ATCTATAGACGAGATCCTTCTA--GCGAATGGATTA 213
||| | | ||| | |||| || | ||||| ||||||||| || | || || |||||
Sbjct 167 TCCTCGGCGATATCAGAGACCGAGA-CTATATACGAGATCC-TC-ACGGCTAACGGATTG 223
Query 214 CCTTTGGGGCTATTTCCTAAAGGCGTGAAAGGATTTACCGTT-AATGGCGAAACGGGACG 272
|| | |||| |||| || |||||||| | || ||| | | || | | ||||||||||||
Sbjct 224 CCGTCGGGGATATTCCCGAAAGGCGTCAGAGAATTCAAC-TTCGACGTCGAAACGGGACG 282
Query 273 GTTCTCGGTTTATTTGAATCAGTCATGCCAGGCTAAGTATGAGACAGAGCTGCATTACGA 332
|||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||||||
Sbjct 283 GTTCTCGGTTTATTTGAATCAGTCATGCGAGGCCAAATACGAGACTGAGCTACATTACGA 342
Query 333 TGAGATTGTTTC-GGGAACGATAGGTTATGCTCAAATCAGGGATTTATCGGGAATCTCAG 391
| | | || | |||| | ||||| | | |||||||| |||||| || |||||||| |
Sbjct 343 CGCCAATATTACAGGGA-CTATAGGGTCTTCTCAAATCTCGGATTTGTCTGGAATCTCGG 401
Query 392 CGCAAGAGCTGTTCTTGTGGTTACAGGTGAAAGGAATCCGAGTCGACGTGCCTAGCTCTG 451
|||||||||||||||||||||| | ||| ||||||||||||||||||||||| || ||||
Sbjct 402 CGCAAGAGCTGTTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTG 461
Query 452 GTCTTATATTCTTCGACGTTGGTGTTCTTCGCAAGCAATACTCTTTGTCTTTGTTCGAGA 511
||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 462 GTCTTATATACTTCGACGTTGGTGTTGTTCGAAAGCAGTACTCTTTGTCTTTGTTCGAGA 521
Query 512 CACCAAGAGATTGTGT-CGCGGTTCGTGGCGATGC-CGAGTTTATTGGTTCAGTCTTCGA 569
|||| |||||||| || | ||||||||| ||| | | | | |||||||| | |
Sbjct 522 CACCGAGAGATTGCGTTC-CGGTTCGTGA-GATTCAC-A----A--GGTTCAGT-T--G- 568
Query 570 TGTTGCCATTGTATCAAGTAGATCAAACTCTTGGAAGAAACA-CTGTTTAGCAGGAGTTG 628
|||||||||| ||||||||||| |||||| |||| || | ||||||| ||
Sbjct 569 -----CCATTGTATCGAGTAGATCAAAATCTTGGGAGAAGCATCA-TTTAGCA--AG--- 617
Query 629 AAGAAATGTTGTTATACTATACGAGAAAGATGGAAAAGATAGATAGATGCTCTCATCTAT 688
| | | || | |||| |||| ||||||| || || ||||||||| ||||||| ||
Sbjct 618 A-G---T-TT-T-ATACCATACCAGAAAGA---AAG-GA-AGATAGATGTTCTCATCAAT 665
Query 689 TCTTGAAGATACTTTCTACTGTTTTGATCTCAAATCTTAGGCATGATTCATGGTCAGAT- 747
|||||||||||||| | ||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 666 TCTTGAAGATACTT-CAACTGTTTTGGTCTCAAATCTTAGGCATGATTCAAAATCAAATT 724
Query 748 GCTTCATTCTTTCCCTTCCCCCATCCCAGTGTTGTTTCTGCATTGCTTTCTCCAGATT-G 806
|||||||||||||||| |||| || ||||| ||||||||| ||| | ||||| ||||| |
Sbjct 725 GCTTCATTCTTTCCCT-CCCC-ATTCCAGTTTTGTTTCTGTATTTCGTTCTC-AGATTAG 781
Query 807 -CGAGGGTGACAGAACCG---AGAGAATCTGTG 835
| ||| ||| |||||| ||||||||||||
Sbjct 782 GCC-GGG-GACTGAACCGTGGAGAGAATCTGTG 812
> Ahg947222 jgi|Araly1|947222|scaffold_703451.1
Length=367
Score = 399 bits (216), Expect = 1e-110
Identities = 278/306 (91%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 555 TGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCTTGGAAGAAACACTG 614
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 65 TGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCTTGTAAGAAACATTG 124
Query 615 TTT-AGCAGGAGTTGAAGAAATGTTGTTATACTATACGAGAAAGATGGAAAAGATAGATA 673
||| | |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 125 TTTTAT-AGGAGTTGAAAAAATGTTGTTATACTATACCAGAAAGATGAAAAAGATAGATA 183
Query 674 GATGCTCTCATCTATTCTTGAAGATACTTTCTACTGTTTTGATCTCAAATCTTAGGCATG 733
|||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 GATGTTCTCAGCTGTTCTTGAAGATACTTTATACTGTTTTGATCTCAAATCTTAGGCATG 243
Query 734 ATTCATGGTCAGATGCTTCATTCTTTCCCTTCCCCCATCCCAGTGTTGTTTCTGCATTGC 793
|||||||||| ||||||||||||||| | ||||| || |||||||||||| ||||||||
Sbjct 244 ATTCATGGTCGGATGCTTCATTCTTTTCTTTCCC--ATACCAGTGTTGTTTGTGCATTGC 301
Query 794 TTTCTCCAGATTGCGAGGGTGACAGAACCGAGAGAATCTGTGAGCGGAAGTTAGACGGTA 853
||||| | |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 302 TTTCT-----T--CGAGGG-GACAAAACCGAGAGAATCTGTGAGCGGAAGTTAGACGGTA 353
Query 854 ACAACG 859
||||||
Sbjct 354 ACAACG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5