BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07470.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478066 jgi|Araly1|478066|fgenesh2_kg.3__767__AT3G07470.1 1491 0.0
Ahg478064 jgi|Araly1|478064|fgenesh2_kg.3__765__AT3G07460.2 492 2e-138
> Ahg478066 jgi|Araly1|478066|fgenesh2_kg.3__767__AT3G07470.1
Length=985
Score = 1491 bits (807), Expect = 0.0
Identities = 946/1009 (94%), Gaps = 26/1009 (3%)
Strand=Plus/Plus
Query 21 tcttctccttcttcgtcttcCCTTAAACCCATTAATTCAATTTCCTGATAAACGAGCAGA 80
|||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 1 TCTTCTTCTTCTTCTTCTTCCCTTAAACCCATTGATTCAATTTCCTAATAAACGAGC--A 58
Query 81 GAGAGATCT-GTCAAAATCACAAACCGTGAATTCGGGAAGAATAAGCCGATGATGCTTCG 139
||||||||| | | ||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 59 GAGAGATCTCG-CGAAATCACCAACCGTGAATTCGGGAAGAATAAG--G-CGATGCTTCG 114
Query 140 TATTGTTCAAATCGCGTTTCTATGTCTCGTTCTCGTCGCCGGGATCTCGATCTCCACGGC 199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 115 TATTGTTCAAATCGCGTTTCTGTGTCTCGTTCTCGTCGCCGGGATCTCGATCTCCTCGGC 174
Query 200 GATATCAGAGACTGAGACTATATACGAGATCCTC-CTGGCAAACGGATTACCTTCGGGGA 258
|||||||||||| ||||||||||||||||||||| | ||| |||||||| || |||||||
Sbjct 175 GATATCAGAGACCGAGACTATATACGAGATCCTCAC-GGCTAACGGATTGCCGTCGGGGA 233
Query 259 TATTCCCGAAAGGTGTCAGAGAATTCACCTTCGACGTCGAAACGGGACGATTCTCGGTTT 318
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 234 TATTCCCGAAAGGCGTCAGAGAATTCAACTTCGACGTCGAAACGGGACGGTTCTCGGTTT 293
Query 319 ATTTGAATCAGGCATGCGAGGCTAAATACGAGACTGAGATACATTACGACGCCAATATTA 378
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 294 ATTTGAATCAGTCATGCGAGGCCAAATACGAGACTGAGCTACATTACGACGCCAATATTA 353
Query 379 CGGGGACTATAGGTTCTGCTCAAATCTCTGATTTGTCTGGAATCTCGGCGCAAGAGCTAT 438
| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 354 CAGGGACTATAGGGTCTTCTCAAATCTCGGATTTGTCTGGAATCTCGGCGCAAGAGCTGT 413
Query 439 TCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTCTTATATACT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTCTTATATACT 473
Query 499 TCGACGTTGGTGTTGTTCGAAAGCAATATTCTTTGTCTTTGTTCGAGACTCCGAGAGATT 558
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 474 TCGACGTTGGTGTTGTTCGAAAGCAGTACTCTTTGTCTTTGTTCGAGACACCGAGAGATT 533
Query 559 GCGTTCCGGTTCGTGGGATTCACAAGGTTGAGTTGCCATTGTACCGAGTAGATCAAAATC 618
||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 534 GCGTTCCGGTTCGTGAGATTCACAAGGTTCAGTTGCCATTGTATCGAGTAGATCAAAATC 593
Query 619 TTGGGAGAAACATCATTTAGCAAGAGTTTTAAAGAATTGTTGTATACCATACCAGAAAGA 678
||||||||| ||||||||||||||||||||| | | ||||||||||||||
Sbjct 594 TTGGGAGAAGCATCATTTAGCAAGAGTTTTA-----T------A--CCATACCAGAAAGA 640
Query 679 AAGGAAGATAGATGTTCTCATCAATCAATTCTTGAAGATACTTCAACTGTTTTGGTCTCA 738
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 641 AAGGAAGATAGATGTTCTCATCAAT---T-CTTGAAGATACTTCAACTGTTTTGGTCTCA 696
Query 739 AATCTTAGGCATGATTCAAAATCAAATTGCTTCATTCTTTCCCTCCCCATTCCAGTTTTG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AATCTTAGGCATGATTCAAAATCAAATTGCTTCATTCTTTCCCTCCCCATTCCAGTTTTG 756
Query 799 CTTCTGTAATTCGTTCTCAGATTAGGCCGGGGACTGAACCGAGGAGAGAATCTGTGGTTT 858
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 757 TTTCTGTATTTCGTTCTCAGATTAGGCCGGGGACTGAACCGTGGAGAGAATCTGTGGTTT 816
Query 859 TGAAAAGATGCTAAAGGGATGGCCCAGATTTTGTTGAAGTGATGATAACTGTGAGGTGAT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TGAAAAGATGCTAAAGGGATGGCCCAGATTTTGTTGAAGTGATGATAACTGTGAGGTGAT 876
Query 919 GAATGTTTTGTGTTGTATTCTTGTGTCATGTCTAAAACAGATATAATAAATCCTATATTT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GAATGTTTTGTGTTGTATTCTTGTGTCATGTCTAAAACAGATATAATAAATCCTATATTT 936
Query 979 AGCCAAATAAGTGTTATAGAAAATTGGCAATTTGCAATCATTTCTCTTT 1027
||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 937 TGCCAAATAAGTGTTATAGAAATTTGGCAATTTGCAATCATTTCCCTTT 985
> Ahg478064 jgi|Araly1|478064|fgenesh2_kg.3__765__AT3G07460.2
Length=816
Score = 492 bits (266), Expect = 2e-138
Identities = 511/623 (82%), Gaps = 42/623 (7%)
Strand=Plus/Plus
Query 132 ATGCTTCGTATTGTTCAAATCGCGTTTCTATGTCTCGTTCTCGTCGCCGGGATCTCGATC 191
||||||||| | |||||||||||| |||| ||| ||||||||| |||| |||||||||||
Sbjct 88 ATGCTTCGTGTAGTTCAAATCGCGCTTCTTTGTTTCGTTCTCGCCGCCAGGATCTCGATC 147
Query 192 TCCACGGCGATATCAGAGACTGAGA-CTATATACGAGATCCTCCTGGCAAACGGATTACC 250
| | || || ||| || || | ||||| |||||||||| ||||| |||||||| ||
Sbjct 148 T-C-CGCCG-----AGA-AC-GA-ATCTATAGACGAGATCCTTCTGGCGAACGGATTGCC 197
Query 251 TTCGGGGATATTCCCGAAAGGTGTCAGAGAATTCA-CCTTCGACGTCGAAACGGGACGAT 309
|| ||||||||| ||||||||||| | || ||||| | || | | |||||||||||| |
Sbjct 198 TTTGGGGATATTTCCGAAAGGTGTGAAAGGATTCAGCGTT-AATGGCGAAACGGGACGGT 256
Query 310 TCTCGGTTTATTTGAATCAGGCATGCGAGGCTAAATACGAGACTGAGATACATTACGACG 369
|||||||||||||||| ||| ||||| ||||||| || ||||| ||| | ||||||||||
Sbjct 257 TCTCGGTTTATTTGAACCAGTCATGCCAGGCTAAGTATGAGACAGAGCTGCATTACGACG 316
Query 370 CCAATATTACGGGGACTATAGGTTCTGCTCAAATCTCTGATTTGTCTGGAATCTCGGCGC 429
| | || |||| || ||||||| |||||||||| |||||||| |||||||| ||||
Sbjct 317 AGATTGTTTCGGGAACGATAGGTTATGCTCAAATCGGGGATTTGTCGGGAATCTCAGCGC 376
Query 430 AAGAGCTATTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTC 489
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 377 AAGAGCTGTTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGCTCTGGTC 436
Query 490 TTATATACTTCGACGTTGGTGTTGTTCGAAAGCAATATTCTTTGTCTTTGTTCGAGACTC 549
|||||| |||||||||||||||| |||| ||||| || |||||||||||||||||||| |
Sbjct 437 TTATATTCTTCGACGTTGGTGTTCTTCGCAAGCAGTACTCTTTGTCTTTGTTCGAGACAC 496
Query 550 CGAGAGATTGCGTTCCGGTTCGTGG-GATTCACA----A--GGTT--G------A-GTTG 593
|||||||||| ||| |||||||| | ||| | | | |||| | | ||||
Sbjct 497 CGAGAGATTGTGTTGCGGTTCGTAGCGATGCTGAGTTTATTGGTTCAGTCTTCGATGTTG 556
Query 594 CCATTGTACCGAGTAGATCAAAATCTTGGGAGAAACA-TCATTTAGCAAGAGTTTTAAAG 652
|||||||| | ||||||||||| |||||| ||||| | | ||||||| |||||| || |
Sbjct 557 CCATTGTATCAAGTAGATCAAACTCTTGGAAGAAATACTG-TTTAGCAGGAGTTT-AA-G 613
Query 653 AATTGTTGT-ATACCATACCAGAAAGAAAGGAA--GATAGAT-GTT-CTCATCAATCAAT 707
|| |||||| |||| |||||||||||| |||| ||||||| | | ||| ||| || ||
Sbjct 614 AAATGTTGTTATACTATACCAGAAAGAT-GGAAAAGATAGATAGATGCTC-TCA-TCTAT 670
Query 708 TCTTGAAGATACTTCAACT-GTT 729
||||||||||||||| ||| |||
Sbjct 671 TCTTGAAGATACTTCTACTTGTT 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5