BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07480.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478067 jgi|Araly1|478067|fgenesh2_kg.3__768__AT3G07480.1 1147 0.0
> Ahg478067 jgi|Araly1|478067|fgenesh2_kg.3__768__AT3G07480.1
Length=776
Score = 1147 bits (621), Expect = 0.0
Identities = 701/739 (95%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 49 CTCCGACCAAAAATTGGGGAACGACGATGGCGACGACTCTTCAGAAACTCTCCTCTCAAA 108
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CTCCGACCAAAAATTGGGGAACGACGATGGCGACGACTCTCCAGAAACTCTCCTCTCAAA 60
Query 109 TCCACCGACTCTCTCCATTCACCAGATCTCTAATCGTTCGCACATCCGCAACGTCTGCTC 168
||||||| || ||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 61 TCCACCGCCTGTCTCCATTCACCAGATCCCTAATCGTTCGCACCTCCGCCACATCTGCTC 120
Query 169 CTTCTCCGTCTCTGGGATCGAAGAAAGTCTCTGACCGAATCGTCAAGCTTTCTGCGATCG 228
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTTCTCCGTCTCTGGGATCTAAGAAAGTCTCCGACCGAATCGTCAAGCTTTCTGCGATCG 180
Query 229 ATCCCGATGGATACAAGCAGGACATCATTGGACTCTCTGGCCAGACTCTCCTTCGTGCGC 288
|||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 181 ATCCCGATGGATACAAGCAGGACATCATTGGACTTTCCGGCCAGACTCTTCTGCGTGCGC 240
Query 289 TCACTCACACTGGTCTGATAGATCCAGCATCGCATAGATTGGATGACATCGAGGCTTGCT 348
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TCACTCACACTGGTCTGATCGATCCAGCATCTCATAGATTGGATGACATCGAGGCTTGCT 300
Query 349 CAGCGGAGTGCGAGGTTCAGATCGCAGAGGAATGGCTCGAGAAGCTCCCGCCGCGTACTT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 CAGCGGAGTGCGAGGTTCAGATCGCAGAGGAATGGCTCGAGAAGCTCCCGCCGCGTACCT 360
Query 409 ACGATGAGGAGTATGTGCTGAAGCGTAGCTCTAGATCCCGTATCTTGAACAAGCACTCGC 468
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 361 ACGACGAGGAGTATGTGCTGAAGCGTAGCTCTAGATCCCGTATCCTGAACAAACACTCGC 420
Query 469 GTCTTGGTTGCCAAGTTGTGTTAACGCAGGAGCTTCAAGGTATGGTCGTCGCTGTCCCTG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCTTGGTTGCCAAGTTGTGTTAACGCAGGAGCTTCAAGGTATGGTCGTCGCTGTCCCTG 480
Query 529 AAGCTAAGCCTTGGGATATTCCGTAAGTTTTTGTT---CTTGAGGATCTCATAAATGTTG 585
|||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 481 AAGCTAAGCCTTGGGATATTCCGTAAGTTTTTTTTTTTCTTAAGGCTCTCATAAATGTTG 540
Query 586 GGTTCGTTCTCAATTTGGCTAATAAAATTCGCTTTGGAAATTTCGGTACTCTGAAGATAA 645
|| |||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 541 GGCTCGTTCTCAAATTGGCTAATAAATTTCTCTTTGGAAATTTCGGTACTCTGCAGATAA 600
Query 646 CTCCATTTGAATCTGTAATTTTCGTTTGCTTACATTTAAATTTT-GTAATGTGGTAAAGA 704
||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||
Sbjct 601 CTCCATTTGAATCTGTAATTT-CGTTTCCTTAC-TTTAAATTTTTGTAATGTGGTAAAGA 658
Query 705 ACTCTGCTTGTTTAAACGATT-CCCTGCTTCAAGTATGGGTGAATGTTGTTTTCTTGATT 763
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 659 ACTTTGCTTGTTTAAACGATTTCCCTGCTTCAAGTATGGGTGAATGTTGCTTTCTTGATT 718
Query 764 TCATTTTCGTTGCTTCTTC 782
|||||||| ||||||||||
Sbjct 719 TCATTTTCATTGCTTCTTC 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5