BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07490.1

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928428 jgi|Araly1|928428|scaffold_300885.1                        782    0.0  


> Ahg928428 jgi|Araly1|928428|scaffold_300885.1
Length=502

 Score =  782 bits (423),  Expect = 0.0
 Identities = 449/462 (97%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCAAGCGGAGCTTGCCAGGATCTTCCAAATGTTCGACAGGAACGGTGATGGCAAA  60
            ||||||||||| ||||||||| |||| ||||||||||||||||||||||| || ||||||
Sbjct  21   ATGGATCAAGCTGAGCTTGCCCGGATATTCCAAATGTTCGACAGGAACGGGGACGGCAAA  80

Query  61   ATCACGAAGCAAGAGCTGAATGATTCATTGGAGAATCTAGGAATCTACATTCCAGACAAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   ATCACGAAGCAAGAGCTGAATGATTCATTGGAGAATCTAGGAATCTACATTCCAGACAAA  140

Query  121  GACTTGGTGCAGATGATCGAGAAGATTGATCTCAACGGTGATGGGTACGTGGACATCGAA  180
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  141  GACTTGGTGCAGATGATCGAGAAGATTGATCTCAACGGTGATGGCTACGTAGACATCGAA  200

Query  181  GAGTTTGGAGGGTTGTACCAGACGATAATGGAGGAAAGAGACGAGGAGGAAGACATGAGA  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  201  GAGTTTGGAGGGTTGTACCAGACGATTATGGAGGAAAGAGACGAGGAGGAAGACATGAGA  260

Query  241  GAGGCTTTCAACGTGTTTGATCAGAACCGGGACGGGTTCATCACGGTGGAAGAGCTAAGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  261  GAGGCTTTCAACGTGTTTGATCAGAACCGGGACGGGTTCATCACGGTGGAAGAGCTAAGA  320

Query  301  TCTGTGTTAGCTTCCTTGGGGCTCAAACAAGGAAGAACCCTAGAGGATTGCAAGAGGATG  360
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  321  TCTGTGTTAGCGTCCTTGGGGCTCAAGCAAGGAAGAACCCTAGAGGATTGCAAGAGGATG  380

Query  361  ATAAGCAAAGTTGACGTTGATGGAGATGGCATGGTGAATTTCAAAGAGTTTAAACAAATG  420
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  381  ATAAGCAAAGTCGACGTTGATGGAGATGGCATGGTGAATTTCAAGGAGTTTAAACAAATG  440

Query  421  ATGAAAGGTGGTGGATTTGCCGCCTTAGGATCAAACTTGTAA  462
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  441  ATGAAAGGTGGTGGATTTGCCGCCTTAGGATCAAACTTGTAA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16712147982


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5