BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07500.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928429 jgi|Araly1|928429|scaffold_300886.1 942 0.0
Ahg478070 jgi|Araly1|478070|fgenesh2_kg.3__771__AT3G07510.1 117 1e-25
> Ahg928429 jgi|Araly1|928429|scaffold_300886.1
Length=713
Score = 942 bits (510), Expect = 0.0
Identities = 601/644 (93%), Gaps = 10/644 (2%)
Strand=Plus/Plus
Query 102 TGGAAGGGAACTCTTTACCCGAAGAAGATGTAGAGATGATGGAGAATTCAGATGTAATGA 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 47 TGGAAGGGAACTCTTTACCCGAAGAAGATGTAGAGATGATGGAGAATTCAGATGGAATGA 106
Query 162 AGACAGTCACAGATGAAGCTTCTCCAATGGTGGAGCCGTTCATTGGTATGGAGTTTGAAT 221
||||||| |||| ||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 107 AGACAGT------TGAATCTTTTCCAATGGTGGAGCCATTCATTGGTATGAAGTTTGAAT 160
Query 222 CAGAAGAGGCTGCAAAGTCTTTCTATGACAATTACGCTACATGCATGGGTTTCGTTATGC 281
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 161 CAGAAGAGGCTGCAAAGTCTTTCTATGACAATTACGCCATATGCATGGGTTTCGTTATGC 220
Query 282 GAGTGGATGCTTTCAGGAGGTCAATGCGAGATGGGACTGTGGTGTGGCGCAGACTCGTGT 341
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 221 GAGTGGATGCTTTCAGGAGGTCGATGCGAGATGGGACTGTGGTGTGGCGCCGACTGGTGT 280
Query 342 GTAATAAAGAAGGATTTCGTAGGTCGAGACCTCGGAGAAGCGAGAGTA-GAAAGCCTCGG 400
|||||||||||||||| ||||| || |||||||||||||| ||||| | |||| ||||||
Sbjct 281 GTAATAAAGAAGGATTCCGTAGATCTAGACCTCGGAGAAGTGAGAGCAGGAAA-CCTCGG 339
Query 401 GCTATAACAAGAGAAGGGTGTAAAGCTCTGATTGTTGTGAAAAGAGAGAAATCCGG-AAC 459
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 340 GCTATAACAAGAGAAGGGTGTAAAGCTCTGATTGTGGTGAAAAGAGAGAAATCCGGAAAC 399
Query 460 ATGGCTTGTTACTAAATTTGAGAAAGAGCATAATCATCCTCTCTTGCCTCTCTCCCCTAA 519
||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 400 -TGGGTTGTCACTAAATTTGAGAAAGAACATAATCATCCTCTCTTGCCTCTCTCGCCTAA 458
Query 520 TGTTCGCCGGAATTTTCAGCTCCCTCAAACACCGGACGAGAAAGACGCAAAGATTAGGGA 579
||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 459 TGTTCGCCGGAATCCTCCGCTCCCTCAAACACCGGACGAGAAAGACGCAAAGATTCGGGA 518
Query 580 GCTGAGTGCAGAGCTGAGCCGAGAGAGAAGGCGTTGTACTGCTTTGCAACAGCAGCTTGA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGAGTGCAGAGCTGAGCCGAGAGAGAAGGCGTTGTACTGCTTTGCAACAGCAGCTTGA 578
Query 640 TATGGTCCTTAAGGAGATGGAAGAACATTCCAACCATCTCACCATTAACATCAATAGTGT 699
||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 579 TATGGTCCTCAAGGAGATGGAAGAACATTCCAACCATCTCTCCACTAACATCAATAATGT 638
Query 700 TATCCAAAGTGTTAGAGACATTGAGTCCAATACTTTCACCAAAC 743
|||||||||||||||||| || ||||| |||| |||||| ||||
Sbjct 639 TATCCAAAGTGTTAGAGAAATCGAGTCAAATATTTTCACTAAAC 682
> Ahg478070 jgi|Araly1|478070|fgenesh2_kg.3__771__AT3G07510.1
Length=892
Score = 117 bits (63), Expect = 1e-25
Identities = 78/85 (92%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 740 AAACAACAAACATAATGCTTCATTTCTGTTCATAAAAGCTTAACATCAAATTCTCATAAT 799
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 892 AAACAGCAAACATAATGCTTCATTTCTGTTCATAAAAGCTTAACATCAAATTTTCTTAAT 833
Query 800 CCAATGTTCTGTA-TCTTGTGATTG 823
|||||||| | | |||||||||||
Sbjct 832 CCAATGTTTTTTTCTCTTGTGATTG 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5