BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07510.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478070 jgi|Araly1|478070|fgenesh2_kg.3__771__AT3G07510.1 1448 0.0
> Ahg478070 jgi|Araly1|478070|fgenesh2_kg.3__771__AT3G07510.1
Length=892
Score = 1448 bits (784), Expect = 0.0
Identities = 857/892 (96%), Gaps = 6/892 (1%)
Strand=Plus/Plus
Query 8 TTTCCGACAAGCTCTCTCTTTAAGACAATCCATCTCTTTCTTCAAGCTAAGCCCCGACGG 67
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 2 TTTCCGACAAGCTCTCTTTTTAAGACAATCAATCTCTTTCTTCAAACTAAGCCCCGACCA 61
Query 68 AAAGCTAAACTCATTGCTTAAATAGATTCCCTCATATCTGAGCCGAAGGTTAACTACATG 127
|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAAGCT-AACACATTGCTTAATTAGATTCCCTCATATCTGAGCCGAAGGTTAACTACATG 120
Query 128 ACCGGCGCTGAGAACGGCGTGAGAATGACGTCACCAGAGGCGTCTTCAACATCCTCCCTC 187
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ACCGGCGTTGAAAACGGCGTGAGAATGACGTCACCAGAGACGTCTTCAACATCCTCCCTC 180
Query 188 GCCACCACAAGTGTCCACGTAAGCGCTCTCGACGGACTCGTGAACGTGAACTCTCTCTTC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCACCACAAGTGTCCACGTAAGCGCTCTCGACGGACTCGTGAACGTGAACTCTCTCTTC 240
Query 248 ACCATCGCCGTCTTCGTTGGTCTTTCCTTAGCGACTCCAGGACAACACAGCCTCGAACAA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCATCGCCGTCTTCGTTGGTCTTTCCTTAGCGACTCCAGGACAACACAGCCTCGAACAA 300
Query 308 CGATCCAGCTGCGACGCAAGTGCTGACGTCGCCAAGAAGCTACTGGTCTTCGAAGTCGTC 367
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 301 CGATCCAGCTGCGATGCAAGTGCTGACGTGGCCAAGAAGCTACTCGTCTTCGAAGTCGTC 360
Query 368 TCCTTCAGCTTCTTCCTCTTCTCCTCTCTTGTAGCTCAGGGTCTTAAGCTTGCCTTAAAC 427
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TCCTTCAGCTTCTTCCTCTTCTCCTCTCTCGTAGCTCAGGGTCTTAAGCTTGCCTTAAAC 420
Query 428 CTTCTTAATAGCAAAGACGTCAACGAGATTTTCAGAGCTCACATCAATATCAAGGTTTTG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCTTAATAGCAAAGACGTCAACGAGATTTTCAGAGCTCACATCAATATCAAGGTTTTG 480
Query 488 AGATGGGGAATGATGGCTTCTGCTGTCGGATCTGTAATGGGCTGTCTCTTCTTGATGCTC 547
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 AGATGGGGAATGATGGCTTCTGCTGTCGGATCTGTCATGGGCTGTCTCTTCTTGATGCTC 540
Query 548 TCTATGGTTAATGTGATTCAGATCCGTCTTGGTTTGCTCTCTTGCGGCAGCAAATCGGCG 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTATGGTTAATGTGATTCAGATCCGTCTTGGTTTGCTCTCTTGCGGCAGCAAATCGGCG 600
Query 608 GCTCAAGCTGTTGCAACGCTCGTCACTCTGGTTTCCTCTGCTCTGCTGATTTACATCTCT 667
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTCAAGCGGTTGCAACGCTCGTCACTCTGGTTTCCTCTGCTCTGCTGATTTACATCTCT 660
Query 668 ACCGCCATTTACGCTTTCTGGCATTGAT---GCTATGTCAAAATTGGATAATGTCCATGG 724
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 661 ACCGCCATTTACGCTTTCTGGCATTGATACTGCTCTGTCAAAATTGGATAATGTCCATGG 720
Query 725 CTTTGTTTTGATTAGCCAATGTGTAATTTCATCATCAATGCCTTCCAATCTAGtttt-tt 783
|||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 721 CTTTATTTTGATTAGCCAGTGTGTAATTTCATCATCAATGCCTTTCAATCTTGTTTTCTT 780
Query 784 gtttttttGTTTCGGAGAATGAAGAATCAATCACAAGATACAGAA-CATTGGATTATGAG 842
||| ||||||||||||||||||||||||||||||||| | | || |||||||||| ||
Sbjct 781 CTTTGTTTGTTTCGGAGAATGAAGAATCAATCACAAGAGAAAAAAACATTGGATTAAGAA 840
Query 843 AATTTGATGTTAAGCTTTTATGAACAGAAATGAAGCATTATGTTTGTTGTTT 894
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 AATTTGATGTTAAGCTTTTATGAACAGAAATGAAGCATTATGTTTGCTGTTT 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5