BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07520.1
Length=2816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903647 jgi|Araly1|903647|Al_scaffold_0003_775 3912 0.0
Ahg484562 jgi|Araly1|484562|fgenesh2_kg.5__554__AT5G48400.2 536 3e-151
Ahg357044 jgi|Araly1|357044|fgenesh1_pg.C_scaffold_8000831 307 3e-82
> Ahg903647 jgi|Araly1|903647|Al_scaffold_0003_775
Length=2394
Score = 3912 bits (2118), Expect = 0.0
Identities = 2295/2382 (96%), Gaps = 6/2382 (0%)
Strand=Plus/Plus
Query 13 ATGATTCGCAACACTGGTTATTTTCTAACTATTTTCTTCCTCGCCTTCATTTCATTTGCA 72
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGATTCGTAACACTGGTTATTTTCTAACTGTTTTCTTCCTCGCCTTCATTTCATTTGCA 60
Query 73 GTAACATGCAGCGGAACTAATCAAAAAGATA-ACGTAGATAGACTTCCAGT-AGTGTACG 130
||||||||||||||||||||| ||||| | | |||||||||||||| || | |||| |||
Sbjct 61 GTAACATGCAGCGGAACTAAT-AAAAAAAAAGACGTAGATAGACTTTCA-TCAGTGCACG 118
Query 131 AAGATGTTCGGATAGGTTTGGTGGTGGACATGGGTTCCATGGAAGGCAAGCTTGTGACAA 190
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 AAGATGTTCGGATTGGTTTGGTGGTGGACATGGGTTCCATGGAAGGCAAGTTTGTGACAA 178
Query 191 CTTCGATTTCGATGGCGCTTTCTGATTTCTATCATGTCAACAATGGCTATAGAACAAGAG 250
||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 179 GTTCGATTTCCATGGCGCTTTCTGATTTCTATAATGTCAACACTGGCTACAGAACAAGAG 238
Query 251 TCTCTGTCTTATCCAGAGACTCTCATGGTGACCCTCTCCAAGCTCTCGCTGCAGCCATGG 310
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCTCTGTCTTAACCAGAGACTCTCATGGTGACCCTCTCCAAGCTCTCGCTGCAGCCATGG 298
Query 311 ACCTCCTGCAAACTGAACAAGTGGAAGCACTTGTTGGTGGACAATCGTTGCTTGAAGCAA 370
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 ACCTCCTGCAAACTGAAAAAGTGGAGGCACTTGTTGGTGGACAATCGTTGCTTGAAGCAA 358
Query 371 AAAATTTAGCAGAGCTTGGGGAGAAAACTAAAGTTCCAGTGA-TTTCTTCTTTCCAAGTT 429
||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 359 AAATTTTGGCAGAGCTTGGGGAGAAAACTAAAGTTCCAGT-ATTTTCTTCTTTCCAAGTT 417
Query 430 CCTAGCTCGTTGAGCTTGGCCAAATATAATTACTTTATTCAAGCTACTCATGATACATCC 489
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 CCTAGCTCGTTGAGCTTGACCAAATATAATTACTTTATTCAAGCTACGCATGATACATCC 477
Query 490 TCTGAAGCAAAGGGAATTGCAGCTCTGTTCAGCAATTTTGATTGGAGAACCGCTGTTCTT 549
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 TCTGAGGCAAAGGGAATCGCAGCTCTATTCAGCAATTTTGATTGGAGAACCGCTGTTCTT 537
Query 550 ATCTACGAGGATGATGATGACTGGAGAGAGAGTATACAACCTTTGGTTGGACATTTCCAA 609
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATCTACGAGGATTATGATGACTGGAGAGAGAGTATACAACCTTTGGTTGGACATTTCCAA 597
Query 610 CAGAACGCCATTCACATTGAGTACAAGGCGGAATTTTCTGTCTCATCTAATGAGGAATGT 669
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 CAGAACGCCATTCACATTGAGTACAAGGCGGAATTTTCGGTCTCATCTAATGAGGAATGT 657
Query 670 ATCATGAAGCAGCTAAGAAAGTTTAAGGCCTCGGGGATAAGGATTTTTGTTGCGCACATT 729
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 658 ATCATGAAGCAGCTAAGAAAGTTAAAGGCCTCTGGGATAAGGATTTTTGTTGCGCACATT 717
Query 730 TCTGAACGAATTGCAAATCGTCTCTTTCCATGTGCTCGGAGGTTAGGAATGATGGAGGAA 789
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TCTGAACAAATTGCAAATCGTCTCTTTCCATTTGCTCGGAGGTTAGGAATGATGGAGGAA 777
Query 790 GGATATGCTTGGATCCTCACAGCGAGAAGCATGAATAATTTTCAAGACACAAATTATTTA 849
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 GGACATGCTTGGATCCTCACAGCGAGAAGCATGAATAATTTTCAAGACACAAACTATTTA 837
Query 850 GCAAAAGAGGAAATGGAAGGTGTGATTGGTTTCAAGTCTTATATTCCGTTGACTGAGGAG 909
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 GCAAAGGAGGCAATGGAAGGTGTGATTGGTTTCAAGTCTTATATTCCATTGACTGAGGAG 897
Query 910 CTTCACAACTTTACTTTGAGATGGAAGAGATCTTTGCGACTCGAAGAAGTAGTTACAAGG 969
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 CTTCACAACTTTACTTCGAGATGGAAGAGATCTTTGCGACTCGAAGAAGTAGTTACAGGG 957
Query 970 ATGAGCGTTTGTAGCATATGGGCTCACGATATAGCTTGGAGTCTTGCAAGAGCAGCAGAA 1029
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 ATGAGCGTTTGTAGCACATGGGCTCACGATATAGCTTGGAGTCTTGCAAGAGCAGCAGGA 1017
Query 1030 GTTGCAAAGTTACCAGGTTTGTCAGTATATGACCTGCTTGAGGCTATTCCAGAGAGTGCT 1089
||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| |||||
Sbjct 1018 GTTGCAAAGTTACCAGGTTTGCCAGTATATAACCTGCTTGAGGCAATTACAGAGGGTGCT 1077
Query 1090 AAGCATAAAGGTTTGAGTGGTGACATCAAATTCATCGATAAGAAGTTTATCTCAGACAAG 1149
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 AAGCATAAAGGTTTGAGTGGTGACATGAAATTCATCGATAAGAAGTTTATCTCAGACAAG 1137
Query 1150 TTTGAGATTGTGAATATGATAGGGAGAGGTGAGAGAAGTGTAGGACTTTGGAATTCTGGT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1138 TTTGAGATTGTGAATATGATAGGGAGAGGTGAGAGAAGTGTAGGACTTTGGGATTCTGGT 1197
Query 1210 AGTTTCATCAGCAATAGAAGAAGACGTTTGTCTTCTACCAAAGCACTTGAGACAATCATC 1269
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1198 AGTTTCATCAGCAACAGAAGAAGACGATTGTCTTCTACCAATGCACTTGAGACAATCATC 1257
Query 1270 TGGCCTGGAGGGTCTACAAGAATTCCGAAAATCCGTTCGTTGAAAGAGAAGAGGCATGGT 1329
||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 1258 TGGCCTGGAGGGTCTACAAGAGTTCCAAAAATCCGTTCGTTGAAAGAGAAGAGACATGGT 1317
Query 1330 AAAAAGAAGAAGCTGAGAGTTTTAGTACCAGCAGGAAACATAACTCCGCAAATACTGGAA 1389
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1318 AAAAAGAAGAAGCTGAGAGTTTTAGTACCAGCGGGAAACATAAATCCGCAAATACTGGAA 1377
Query 1390 GTGAAAACAGATTTTAAAACTGGAGTCACAGCTGCTACAGGATACTGTATTGACGTTTTT 1449
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1378 GTGAAAACAGATTTAAAAACTGGAGTCACGGCTGCTACAGGTTACTGTATTGAAGTTTTT 1437
Query 1450 GAGACATCAATCCTACCTTTCAATTATGAAGTGGAGTACATACCTTGGCCTGGTGCAATT 1509
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAGACATCAATTCTACCTTTCAATTATGAAGTGGAGTACATACCTTGGCCTGGTGCAATT 1497
Query 1510 AACTACAAGAACTACAACGATCTTGTGTACACACTGTATAGCCAGAAAGACAAGTACGAT 1569
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1498 AACTACAAGAACTACAACGATCTTCTCTACACACTGTATAGCCAGAAAGACAAGTACGAT 1557
Query 1570 GCAGCTGTTGGGGATATCACGATTACTGATAACAGATCTTTATATGTAGATTTTACATTA 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GCAGCTGTTGGGGATATCACGATTACTGATAACAGATCTTTATATGTAGATTTTACATTA 1617
Query 1630 CCTTTCACTGATATGGGACTCGCAGTTGTTACTGCCAAAGACAAAAGCATGTGGATTATC 1689
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1618 CCTTTCACTGATATGGGTCTCGCAGTTGTGACTGCCAAAGACAAAAGCATGTGGATTATC 1677
Query 1690 TTTAAGCCTTTGACACTTAGTCTTTGGCTAACAATTGCAAGTTTCTTTATCTTGACGGGG 1749
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1678 TTTAAGCCTTTGACACTTAGTCTTTGGCTAACAATTGCAACTTTCTTTATCTTGACGGGG 1737
Query 1750 GCTATAGTTTGGTTGATAGAGCGGCATGATAACGCTGACTTCCAAGGCTCTTGTTTCCAA 1809
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1738 GCTATAGTTTGGTTGATAGAGCGGCATGATAACACTGACTTCCAAGGCTCTTGTTTCCAA 1797
Query 1810 CAGATTGGAACATTGCTATGTTTTGGGTTCTCGACCCTTGTCTTTGCCCATCGGGAGAGG 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CAGATTGGAACATTGCTATGTTTTGGGTTCTCGACCCTTGTCTTTGCCCATCGGGAGAGG 1857
Query 1870 CTGCAACATAATATGTCAAGATTTGTAGTTATTGTTTGGATATTTGCAGTGCTTATATTG 1929
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CTACAACATAATATGTCAAGATTTGTAGTTATTGTTTGGATATTTGCAGTGCTTATATTG 1917
Query 1930 ACTTCAAATTACACTGCAACGTTGACATCAGTGATGACGGTTCAACAGATACGCGGGTTG 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1918 ACTTCAAATTACACTGCAACGTTGACATCAGTGATGACGGTTCAACAGATACGAGGGTTG 1977
Query 1990 AAATCAAACGAAAACATTGGCTTCTTTTCTGCCTCTATTGCAGCAAATGTGGTTAATGAT 2049
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1978 AAATCAAACGAAAACATTGGCTTCTTTTCTGCCTCTATAGCAGCAAATGTGGTTAATGAG 2037
Query 2050 AATCCTACGTTCCAAGGACCGAGATACAAGGGATTAAAGACAGCTGACGATTTTACAAAT 2109
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AATCCTACGTTCCAAGGACCTAGATACAAGGGATTAAAGACAGCTGACGATTTTACAAAT 2097
Query 2110 GCTTTAAGGAATGGAACTATCTCGTTTATCGTCGATGAAGTTCCATATGTAAAGCTCTTT 2169
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2098 GCTTTAAGGAATGGAACTATCTCGTTCATCGTCGATGAAGTTCCATATGTAAAGCTCTTT 2157
Query 2170 GTTGCAAAGCACCCTTCAGAATTCGTCATTGTCGAAACCGAAAGCGTAACCAACGGCTTT 2229
|||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 2158 GTTGCAAAACACCCTTCAGAATTCGAAATTGTCAAAACCGAAAGCGTCACCAACGGCTTT 2217
Query 2230 GGATTTGCTTTCCAGAAAGGTTCTCCTTTGGTTCAAAAGGTGTCAAGAGAAATCGAAAAG 2289
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 2218 GGATTTGCTTTCCAGAAAGGTTCTCCTTTGGTTCAGAAGGTGACAAGAGAAATCGCAAAG 2277
Query 2290 CTAAGGAGAACAGAGAAGCTAAAAGCCATAGAGAATTGGTGGTTCCAGAGACAAACGACG 2349
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 CTAAGAAGAACAGAGAAGCTAAAAGCCATAGAGAATTGGTGGTTCCAGAGACAAACGACG 2337
Query 2350 TCAGCCACAAGCGAGGATACGTTCCATCCTCTCACTGTATAC 2391
||||||||||||||||||||||||||||||||||| || |||
Sbjct 2338 TCAGCCACAAGCGAGGATACGTTCCATCCTCTCACAGTTTAC 2379
> Ahg484562 jgi|Araly1|484562|fgenesh2_kg.5__554__AT5G48400.2
Length=2595
Score = 536 bits (290), Expect = 3e-151
Identities = 1400/1913 (73%), Gaps = 168/1913 (9%)
Strand=Plus/Plus
Query 145 GGTTTGGTGGTGGACATGGGTTCCATGGAAGGCAAGCTTGTGACAA-CTTC-GATTTCGA 202
|||||| | |||| |||||||| ||||||| ||| | |||| || | || | |||| |
Sbjct 136 GGTTTGATTTTGGATTTGGGTTCCGTGGAAGGAAAGATAGTGAGAAGC-TCTG-TTTCCA 193
Query 203 TGGCGCTTTCTGATTTCTA--TCATGTCAACAATGGCTATAGAACAAGAGTCTCTGTCTT 260
|||||||||| |||||||| |||| | |||| | || | ||||||||||||| | ||
Sbjct 194 TGGCGCTTTCCGATTTCTACGTCAT-T-AACAGTCATTACAAAACAAGAGTCTCT-TTTT 250
Query 261 -A-TCCAGAGACTCTCATGGTGACCCTCTCCAAGCTCTCGCTGCAGCCATGGACCTCCTG 318
| | | | |||||||||| || ||||| | ||||||| | | || || || | |||
Sbjct 251 CAGT-TAAAAACTCTCATGGAGAGCCTCTTCTTGCTCTCGGTTCTGCTATAGATTTGCTG 309
Query 319 CAAACTGAACAAGTGGAAGCACTTGTTGG-TGGACAATCGTTGCTTGAAGCAAAAAATTT 377
||||||||| ||| |||||| || |||| ||| | |||||||| ||| | || |||
Sbjct 310 CAAACTGAAGGAGTAGAAGCAATTATTGGCGGGA-ATTCGTTGCTGGAAACGAAGCTTTT 368
Query 378 AGCAGAGCTTGGGGAGAAAACTAAAGTTCCAGTGATTT--CT--TCTTTCCAAGTTCCTA 433
|| || ||||| |||||| ||| ||||| ||||||| || || ||| | || | |
Sbjct 369 GGCGGAACTTGGCGAGAAAGCTAGGGTTCCTGTGATTTCACTAAACTCTCCGA-TTTC-A 426
Query 434 GCTCGTTGAGCTTG-GCCAAATATAATTACTTTATTCAAGCTACTCATGATACAT-CCTC 491
| ||| | ||| | || ||| | |||||| || ||||| || |||||| | | ||||
Sbjct 427 --T-GTTCA--TTGAG-CAGATACAGTTACTTGATCCAAGCCACGCATGATTC-TGCCTC 479
Query 492 TGAAGCAAAGGGAATTGCAGCTCTGTTCAGCAATTTTGATTGGAGA-ACCGCTGTTCTTA 550
||| || ||||||||| ||||| || ||| |||||||||| | | | || ||||
Sbjct 480 TGAGGCTAAGGGAATTACAGCTTTGATCAATGGGTTTGATTGGA-ACAGTGTTGCTCTTG 538
Query 551 TCTACGAGGATGATGATGACTGGAGAGAGAGTATACAACCTT-TGGTTGGA-CATTTCCA 608
| || || ||| ||||||| |||||||||| ||| | || ||| |||| ||||| ||
Sbjct 539 TATATGAAGATCATGATGATTGGAGAGAGACTAT-GTATTTTATGG-TGGAGCATTTACA 596
Query 609 ACAGAACGCCATTCACATTGAGTACAAG-GCGGAATTTT-CTGTCTCATCTAA-TGAGGA 665
||||| | ||| | ||| |||| || |||| ||||||| || || ||| ||
Sbjct 597 TGAGAACAACGTTCGTGTACAGTCCAAGATTGG--TTTTACTGTCTCTTC-AAGTGAAGA 653
Query 666 ATGTATCATGAAGCAGCTA-AGAAAGTTTAAGGCCTCGGGGATAA-GGATTTTTGTTGCG 723
| | | | | | | | || || ||| | |||| | ||| | || | | |||||||
Sbjct 654 TTTTGTGACGGATCGGTTACAG-AAGCTGAAGGAATTGGGAACAACTG-TCTTTGTTGTT 711
Query 724 CACATT-TCTGAACG-AATTGCAAATCGTCTCTTTCCATGTGCTCG-GAGGTTAGGAATG 780
||| || |||||| | ||||||| || |||||| ||||||||| | || ||||| ||
Sbjct 712 CAC-TTGTCTGAA-GTTATTGCAACTCATCTCTTCCCATGTGCT-GAGAAATTAGGGTTG 768
Query 781 ATGGAG-GAAGGATATGCTTGGATCCTCACAGCGAGAAGCATGAATAATTTTCAAG-A-- 836
|||| | ||||| | ||||||||| ||||| || | ||||||| | |||||| | |
Sbjct 769 ATGG-GTGAAGGGTTTGCTTGGATTCTCACTGCCAAAAGCATGGGCACTTTTCATGAATC 827
Query 837 CACAAATTATTTAGCAAAAGAGGAAATGGAAGGTGTGATTGGTTTCAAGTCTTATATTCC 896
|| || |||| ||||| |||| ||||||||||||| ||||||||||||||||| | |
Sbjct 828 CATTGATGATTTCGCAAAGGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTATGTAAC 887
Query 897 GTTGACTGAGGAGCTTCACAACTTT-ACTTTGAGATGGAAG-AGATCTTTGCGACTCGAA 954
|| || | || ||||| || ||| |||||||||||| || ||||| ||| | | |||
Sbjct 888 AATGTCTAAAGAACTTCA-AAATTTCACTTTGAGATGG-AGAAGATCACTGCCAGTTGAA 945
Query 955 G-AA-GTAG-TTACAAGGA-TGAGCGTTTGTAGCATATGGGCTCACGATATAGCTTGGAG 1010
| || | || | || || |||| | | | | |||||||||| ||||| |||||| |
Sbjct 946 GAAACGGAGATAAC-TCGATTGAGTATCTCTGGTGTATGGGCTCATGATATCGCTTGGGG 1004
Query 1011 TCTTGCAAGAGCAGCAGAAGTTGCAAAGTTACCAGGTTTGTCAGTATATGACCTGCTTGA 1070
||| || || ||||| |||||| || | | ||| | | ||| | | | | |||||
Sbjct 1005 TCTGGCGAGGGCAGCTGAAGTTATAAGGATGCCAAATGTATCA-T-CA-AATTTCCTTGA 1061
Query 1071 GGCTATTCCAGAGAGTGCTAAGCATAAAGGTTTGAGTGGTGACATCAAATT-CATCGATA 1129
||| | | || |||| | || | ||| |||||||| ||||| || |||| ||| ||||
Sbjct 1062 GGC-AAT-CACAGAGAG-TAGGTTTAAGGGTTTGAGGGGTGATTTCCAATTGCAT-GATA 1117
Query 1130 AGAAGTT-TATCTCAGACAAGTTTGAGATTGTGAATATGATAGGGAG-AGGTGAGAGAAG 1187
||||||| | | ||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1118 AGAAGTTGT-TATCAAACAAGTTTGAGATTGTGAATATGATAGG-ATCAGGTGAGAGAAG 1175
Query 1188 TGTAGGACTTTGGAATTCT---GGTAGTTTCATCAGCAATAGAAGAAGACGTTTGTCTTC 1244
|||||| ||||||||||| |||||||||| ||||||||||| | ||| |||||
Sbjct 1176 GGTAGGATTTTGGAATTCTAATGGTAGTTTCA---GCAATAGAAGAC-A-GTTA-TCTTC 1229
Query 1245 TAC-CAA-AGCA--CTTGAGACAATCATCTGGCCTGGAGGGTCTAC-AAGAATTCCGAAA 1299
||| || | || || ||||| || || |||||||| |||||| | || || |||||||
Sbjct 1230 TACTCATGA-CAAGCTGGAGACCATAATTTGGCCTGGTGGGTCTGCTAA-AAGTCCGAAA 1287
Query 1300 ATCCGTT-CGTTGAAAGAGAAGAGGCATGGTAAAAAGAAGAAGCTGAGAGTT-TTAGT-A 1356
|| | | || |||| ||| | |||| | | || | |||||| ||| || || |
Sbjct 1288 GGGAGTAGCCT--AA-GAGA-GAG-C--GGTAGACA-AA-A-GCTGAGGGTTCTT-GTTA 1336
Query 1357 CCAGC-AGGAA-ACATAACTCCGCAAATACTG--GAAG-T-GAAAACAGATTT--TAA-A 1407
| | | || || | || ||| ||| |||| |||| | || | | |||| ||| |
Sbjct 1337 C-ATCTAGCAATAGAT---TCC-CAAG-ACTGATGAAGGTAGAGA-CTGATTCAGTAACA 1389
Query 1408 ACTGG-AGTCACAGCTG-CTACAGGATACTGTATTGACGTTTTTGAGACATCAATC-CTA 1464
| || | | ||| || | | ||| | ||||| || || ||| || | || || | |
Sbjct 1390 AATGATA-TAACAAATGTCGA-AGGGTTTTGTATAGAAGTCTTTCAGGCTTCCATTGC-A 1446
Query 1465 CCTTTCAATTATGAAGTGGAGTACATACCTTGGC-CTGGTGCAATTAACTACAAGAACTA 1523
||||| |||||||||||||||||||||| ||||| | || || ||||||| || | |
Sbjct 1447 CCTTTTAATTATGAAGTGGAGTACATACGTTGGCGCAA-TGGAAGTAACTAC--GA-C-A 1501
Query 1524 CAACGATCTTGTGTACACACTGT-ATAGCCAGAAAGACAAGTACGATGCAGCTGTTGGG- 1581
| ||||| || |||| | |||||||||||||||| || |||| || || |||
Sbjct 1502 -A----TCTTGCATATGCACT-TCATAGCCAGAAAGACAAATATGATGTGGCCGT-GGGA 1554
Query 1582 GATATCACGATTACTGATAACAGATCTTTATATGTAGATTTTACATTACCTTTCACTGAT 1641
||||| || || ||| ||| ||||| ||||| |||||||| || || ||||| ||
Sbjct 1555 GATATTACAATCACTTCTAATAGATCGACCTATGTTGATTTTACGTTGCCATTCACCGAA 1614
Query 1642 ATGGGACTCGC-AGTTGTTA-CTGCCAAAG-ACAAAAGCATGTGGAT-TATCTTT-AAGC 1696
||||| || | | |||| | | || || | | | ||| |||||| | | ||||| || |
Sbjct 1615 ATGGGTCTTGGGA-TTGT-AGCAGC-AACGGAGAGAAGTATGTGGGTGT-TCTTTCAA-C 1669
Query 1697 CTTTGACACTTAG-TCTTTGGCTAACAATTGCAAG-TTTCTTTATCTTGACGGGGGCTAT 1754
|| | |||| || |||||||||||||| |||| | ||||||| |||||||||| |||
Sbjct 1670 CTCTAACACC-AGATCTTTGGCTAACAAGTGCA-GCTTTCTTTGTCTTGACGGGTATTAT 1727
Query 1755 AGTTTGGTTGATAGAGCGGCATGATAACGCTGACTTCCAAGGCTCTTGTTTC-CAACAGA 1813
||||||||||||||| | ||||| ||| |||| ||||| || ||||| | | || || |
Sbjct 1728 AGTTTGGTTGATAGAAAGACATGAGAACACTGAGTTCCAGGGATCTTGGT-CACAGCAAA 1786
Query 1814 TTGGAACAT-TGCTATGTTTTGGGTTCTCGACCCTTGTCTT-TGCCCATCGGGAGAGGCT 1871
||||| | |||| || ||||| ||||| |||||||| || ||| ||| ||||||||||
Sbjct 1787 TTGGAGT-TGTGCTTTGGTTTGGCTTCTCTACCCTTGT-TTATGCTCATAGGGAGAGGCT 1844
Query 1872 GCAACATAA-TATGTCAAGATTTGTAGTTATTGTTTGGATATTTGCAGTGCTTATATTGA 1930
|||| || | | |||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 1845 AAAACACAACT-TATCAAGATTTGTAGTTACAGTTTGGGTATTTGCAGTGCTCATATTGG 1903
Query 1931 CTT-CAAATTACACTGCAACGTTGACATCAGTGATGACGGTTCAACAGATACG 1982
|| ||| |||||||||||| ||||||||| ||||||| || ||||| |||||
Sbjct 1904 -TTACAAGTTACACTGCAACATTGACATCAATGATGACAGTGCAACAAATACG 1955
> Ahg357044 jgi|Araly1|357044|fgenesh1_pg.C_scaffold_8000831
Length=2526
Score = 307 bits (166), Expect = 3e-82
Identities = 879/1206 (73%), Gaps = 118/1206 (10%)
Strand=Plus/Plus
Query 143 TAGGTTTGGTGGTGGACATGGGTTCCATGGAAGGCAAGCTTGTGACAA-CTTC-GATTTC 200
|||| ||||| |||| |||||||| ||||||| ||| | |||| || | || | ||||
Sbjct 128 TAGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGAGAAGC-TCTG-TTTC 185
Query 201 GATGGCGCTTTCTGATTTCTA--TCATGTCAACAATGGCTATAGAACAAGAGTCTCTGTC 258
||||||||||| |||||||| ||| || | |||| || | ||||||||||||| ||
Sbjct 186 TATGGCGCTTTCCGATTTCTACGCCAT-TC-ATAATGATTACAAAACAAGAGTCTCTCTC 243
Query 259 TTA-TCCAGAGACTCTCATGGTGACCCTC-TCCAAGCTCTCGCTGCAGCCATGGACCTCC 316
| | | |||| |||||||||| || |||| || | ||||| || | || | || ||
Sbjct 244 TCAGT-CAGAAACTCTCATGGAGAGCCTCTTCTTA-CTCTCTCTTCTGCTGTAGATCTAT 301
Query 317 TGCAAACTGAACAAGTGGAAGC-ACTTGTTGG-TGGACAATCGTTGCTT-GAAGCAAAAA 373
||||||||||| ||| ||||| | || |||| ||| | |||||| || ||||||||
Sbjct 302 TGCAAACTGAAGGAGTAGAAGCGA-TTATTGGCGGGA-ATTCGTTG-TTGGAAGCAAAGC 358
Query 374 ATTTAGCAGAGCTTGGGGAGAAAACTAAAGTTCC-AGTGATTT--CTT--CTTTCCAAGT 428
||||| || ||||| |||||| ||| ||||| | |||||| ||| || ||| | |
Sbjct 359 TTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCCTA-TGATTTCACTTGACTCTCCTATT 417
Query 429 TCCTAGCTCGTTGAGCTTGGCCAAATATAATTACTTTATTCAAGCTACTCATGA-TACAT 487
|| | | || ||||| | ||||| | | |||| || ||||| || ||||| | ||
Sbjct 418 TCAT-GTTCATTGAG--T----AAATACAGTCACTTGATCCAAGCCACACATGATTCCA- 469
Query 488 CCTCTGAAGCAAAGGGAATTGCAGCTCTGTTCAGCAAT---TTTGATTGGAGA-ACCGCT 543
|||| || || ||||| ||| || ||| || | ||| |||||||||| | | | |
Sbjct 470 CCTCAGAGGCTAAGGGGATTACA--TCT-TTTATTAATGGGTTTGATTGGA-ACAGTGTT 525
Query 544 GTTCTTATCTACGAGGATGATGATGACTGGAGAGAGAGTATACAACCTT-TGGTTGGA-C 601
| |||| | || || ||| ||||||| |||| ||| ||| ||| ||| | | |||| |
Sbjct 526 GCTCTTGTTTATGAAGATCATGATGATTGGAAAGACTCTATGCAA-CTTCTTG-TGGACC 583
Query 602 ATTTCCAACAGAACGCCATTCACATTGAGTACAAG-GCGGAATTTT-CTGTCTCATCTAA 659
||||||| ||||| ||| | ||| |||| || |||| ||||||| || |
Sbjct 584 ATTTCCATGAGAACAATGTTCGTGTAAAGTCCAAGATTGG--TTTTACTGTCTCTTCGAG 641
Query 660 TGAGGAATGTATCATGAAGCAGCTAAGAAAGTTTAAGGCCTCGGGGATAA-GGATTTTTG 718
|||||| | ||| ||| | | | || | ||| |||| |||| ||| | || | | ||||
Sbjct 642 TGAGGATTCTATGATGGATCGGTTACGGAAGCTTAACGCCTTGGGAACAACTG-TCTTTG 700
Query 719 TTGCGCACATT-TCTGAACG-AATTGCAAATCGTCTCTTTCCATGTGCTCG-GAGGTTAG 775
||| ||| || || ||| | || |||| | |||||| ||||||||| | || ||||
Sbjct 701 TTGTTCAC-TTGTC-GAAAGTTATGGCAACTTATCTCTTCCCATGTGCT-GAGAAATTAG 757
Query 776 GAATGATGGAG-GAAGGATATGCTTGGATCCTCACAGCGAGAAGCATGAATAATTTTCA- 833
| ||||||| | ||||| | ||||||||| ||||| || | ||||||||| | ||||||
Sbjct 758 GGATGATGG-GTGAAGGTTTTGCTTGGATTCTCACTGCCAAAAGCATGAACAGTTTTCAT 816
Query 834 -AG-ACACAAATTATTTAGCAAAAGAGGA-AATGGAAGGTGTGATTGGTTTCAAGTCTTA 890
|| || || |||| ||||| || || ||||||||||||| |||||||||| |||||
Sbjct 817 GAGTCCATTGATGATTTCGCAAAGGA-GACAATGGAAGGTGTGGTTGGTTTCAAATCTTA 875
Query 891 TATTCCGTTGACTGAGGAGCTTCACAACTTT-ACTTTGAGATGGAAG-AGATCTTTGCGA 948
||||| || | | ||| ||||||| ||| |||||||| ||| || | ||| ||| |
Sbjct 876 CATTCCAATGTCAAAAGAGGTTCACAA-TTTCACTTTGAGGTGG-AGAAAATCACTGC-A 932
Query 949 -CTCGAAG-A---A----G--T-AG-TTACAAGGATGAGCGTTTGTAGCATATGGGCTCA 995
| |||| | | | | || |||| || ||||| | | | | || ||||||||
Sbjct 933 TGTTGAAGAAGTTATTGGGACTGAGATTACTCGGTTGAGCATCTCTGGTATTTGGGCTCA 992
Query 996 CGATATAGCTTGGAG-TCTTGCAAGAGCAGCAGAAGTTGCAAAGTTACCAGGTTTGTCAG 1054
|||||| |||||| | ||| || || ||||| |||||| || | | ||| ||| |
Sbjct 993 CGATATCGCTTGG-GCTCTGGCGAGTGCAGCGGAAGTTATAAGGATGCCA--AATGT-A- 1047
Query 1055 TATAT-GAC-CTGCTTGAGGCTATTCCAGAGAGTGCTAAGCATAAAGGTTTGAGTGGTGA 1112
| || || || |||||||| | | || |||| | ||| || |||||||||||||||
Sbjct 1048 -ACATCAACTCTCCTTGAGGC-AAT-CACAGAGAG-TAAATTTATAGGTTTGAGTGGTGA 1103
Query 1113 CATCAAATT-CATCGATAAGAAGTT-TATCTCAGACAAGTTTGAGATTGTGAATATGATA 1170
| || |||| || |||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 1104 CTTCCAATTAGAT-GATAGGAAGTTGT-TATCAGACAAGTTTGAGATTGTGAATATGATA 1161
Query 1171 GGGAG-AGGTGAGAGAAGTG-TAGGACTT-TGGAATTCT---GGTAGTTTCATCAGCAAT 1224
|| | |||||||||||| | ||||| || ||||||| | |||||||| | ||||||
Sbjct 1162 GG-ATCAGGTGAGAGAAG-GATAGGA-TTCTGGAATTTTAATGGTAGTTT--T-AGCAAT 1215
Query 1225 AGAAGAAGACGTTTGTCTTCTAC-CA-AAGCA--CTTGAGACAATCATCTGGCCTGGAGG 1280
|||||| | ||| || ||||| || || || |||||||| || ||||||||||| ||
Sbjct 1216 AGAAGAC-A--TTTATCATCTACTCATAA-CAATCTTGAGACCATAATCTGGCCTGGTGG 1271
Query 1281 GTCTAC 1286
|||||
Sbjct 1272 CTCTAC 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106271783550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5