BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07525.2
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928432 jgi|Araly1|928432|scaffold_300889.1 1107 0.0
> Ahg928432 jgi|Araly1|928432|scaffold_300889.1
Length=718
Score = 1107 bits (599), Expect = 0.0
Identities = 681/721 (94%), Gaps = 3/721 (0%)
Strand=Plus/Plus
Query 3 CGATTTTGTTTACTCCTCCAATGGATTCAGCTCGAGAGGTCAGCGATGGTAGACTCACCG 62
||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGACTTTGTTTGCTCCTCCGATGGATTCAGCTCGAGAGGTCAGCGATGGTAGACTCACCG 60
Query 63 TCGAAGGTTTCTCTGTAGCTTCTCGAGCTTTTGCCGATAAGTGGAAGATACATAACCAAT 122
| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTGAGGGTTTCTCTGTAGCTGCTCGAACTTTTGCCGATAAGTGGAAGATACATAACCAAT 120
Query 123 CGTTCCCTCCATGGTCTTGGGTTCCTCTGATCAATCGAACTCTACTTGTTTCAAAGAAGC 182
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CGTTCCCTCCATGGTCTTGGGTTCCTCTGATCAATCGAACTCTACTTGTCTCAAAGAAGC 180
Query 183 AGGAGGAAGGTTACTTGTCGCTGGAGAAGATCATAATTCTCAGTTCACTTGAGGAGGAAA 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 AGGAGGAAGGTTACTTGTCGCTGGAGAAGATCATCATTCTCAGTTCACTTGAGGA--AA- 237
Query 243 TTCCAGAGGATGAATCTCTAAATGTAGCTACTGATTGCTTGGAAAAAGAAGAAACAGTTG 302
|||| |||||||||||||||||||| || |||||||||| ||||||||||||| || |||
Sbjct 238 TTCCGGAGGATGAATCTCTAAATGTCGCAACTGATTGCTCGGAAAAAGAAGAATCAATTG 297
Query 303 ATCACACGATTTTGGTCCCAACCATGGAAAATGAAGCACACTACTATGATTTCCATATAG 362
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 ATCACACGATCTTGGTCCCAACCCTGGAAAATGAAGCACACTACTATGATTTCCATATAG 357
Query 363 TTTACAGTGCATCATACAAGGTTCCTGTGCTATATTTTCGCGGATACTGCAGCGGTGGAG 422
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTACAGTGCTTCATACAAGGTTCCTGTGCTATATTTTCGCGGATACTGCAGCGGTGGAC 417
Query 423 AACCTCTTGCTTTGGATGTCATaaaaaaaGATGTACCCTCATGCTCTGTTAGTCTTTTGC 482
|||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 418 AACCCCTTGCTTTGGATGTCATAAAAAAAGATCTGCCCTCATGCTCTCTTAGTCTTTTGC 477
Query 483 TGGAATCTAAGTGGACTTTTATAACTCAAGAGGAGCATCCATATTTGAACAGGCCATGGT 542
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 478 TGGAATCTAAGTGGACATTTATAACTCAGGAGGAGCACCCATATTTAAACAGGCCATGGT 537
Query 543 TCAAGCTACATCCCTGTGGGACTGAGGACTGGATCAAGCTGCTTTCCCAAAGTAGCAGCT 602
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 538 TCAAGCTACATCCCTGTGGGACTGAGGAATGGATCAAGCTGCTTTCTCAAAGTAGCAGCT 597
Query 603 CTTCTGGATGTCAGATGCCAATTGTGTTGTACTTGGTTTCATGGTTCTCTGTTGTCGGGC 662
||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct 598 CTTCTGGATGTCATATGCCAGTTGAGTTGTACTTGGTCTCATGGTTCTCTGTTGTCGGGC 657
Query 663 AGGTGGTTGGTCTTAGGATCCCTCTTGAGATGCTGAATTAGTAGCCATCTTCTGTTATCA 722
|||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||
Sbjct 658 AGGTGGTTGGTCTTAGGACCCCTCTTCAGATGCTGAATTAGGAACCATCTTCTGTTATCA 717
Query 723 A 723
|
Sbjct 718 A 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5