BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07530.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928433 jgi|Araly1|928433|scaffold_300890.1 3347 0.0
Ahg359763 jgi|Araly1|359763|fgenesh1_pg.C_scaffold_908000001 1775 0.0
> Ahg928433 jgi|Araly1|928433|scaffold_300890.1
Length=2141
Score = 3347 bits (1812), Expect = 0.0
Identities = 2006/2102 (95%), Gaps = 4/2102 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTGACATGTCTGAGCAAAGGAGATGGCTTTCACTATCCGCCTTGTCATATGCTG 60
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 21 ATGAAATTGACATGTCTGAGCAAAGGAGATGGCTTTCATTATCCGCCTTGTCATATGTTG 80
Query 61 AATC-TATGTGGTTTCAGGATTTTAATTGACTGCCCTTTGGACCTTTCGGCAATCAAAAT 119
|| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 81 AA-CATATGTGGTTTCAGGATATTGATTGACTGCCCTTTGGACCTTTCGGCAATCAAAAT 139
Query 120 CTTCTCTCCTGTTCCATCTGGTGTTGG-TTCTGAAGCTTCTGAATATCTATCTGATGAGT 178
|||||| |||||| |||| ||| ||| ||||||||||||| |||||| |||||||||||
Sbjct 140 CTTCTCACCTGTTATATCTTGTG-TGGCTTCTGAAGCTTCTAAATATCCATCTGATGAGT 198
Query 179 CGTTGGATGCTCAGAATCCAATTCAAAAGAAGCAAAAACTGGAGAGACAGCTAACTTGTG 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 199 CGTTGGATGCTCAGAATCCAATTCAAAAGAAGCATAAACTGGAGAGACAGCTAACTTTTG 258
Query 239 CTGATTTGGTGTGTGAAGAACCGTGGTACAAAACTGTGAAAGCCTTGCATTTGTGGGAGG 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 259 CTGATTTGGTGTGTGAAGAACCGTGGTACAAAACTGTGAAACCCTTGCATTTGTGGGATG 318
Query 299 CTTCTTTCATTGATATTGTTCTCATCTCTAACCCTATGGGATTGCTCGGATTGCCATTCC 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 319 CTTCTTTCATTGATATTGTTCTCATCTCCAACCCTATGGGATTGCTCGGATTGCCATTCC 378
Query 359 TTACTCAAAACCCTGGATTTTTTGCCAAGATATATATGACTGAAGTAACAGCGAAGATTG 418
|||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 379 TTACCCAAAACCCTGGATTTTCTGCCAAGATATATATGACTGAAGCAACAGCTAAGATTG 438
Query 419 GACAGCTCATGATGGAAGATATTGTCTCGATGCACAAGGAATTCAGATGCTTTCATGGAC 478
|||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 439 GACAGCTCATGATGGAAGATCTTGTCTCGATGCACGCGGAATTCAGATGTTTTCATGGAC 498
Query 479 CTGACAACTCCAGTTTTCCTGGGTGGATAAAGAATTTAGATAGTGAACAAGTACCAGCCT 538
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 499 CTGACAACTCCAGTTTCCCTGGGTGGATAAAGAATTTAGATCGTGAACAAGTACCAGCCT 558
Query 539 TGCTTAAAAAAGTTGTCTTCGGCGAGAGTGGTGATGATCTGGGCAGTTGGATGCGTCTGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TGCTTAAAAAAGTTGTCTTCGGCGAGAGTGGTGATGATCTGGGCAGTTGGATGCGTCTGT 618
Query 599 ACAGTTTAGATGATATAGAGAGTTGCATGAAGAAGGTTCAAGGCGTAAAGTTTGCAGAAG 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 619 ACAGTTTAGATGATATAGAGAGTTGCATGAAGAAGGTTCAAGCCGTAAAGTTTGCAGAAG 678
Query 659 AAGTTTGTTACAATGGGACCTTAATCATTAAGGCTCTAAGTTCAGGTCTAGATATTGGGG 718
|||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 679 AAGTATGTTATAATGGGACCTTAAACATTAAGGCTCTAAGTTCAGGTCTAGATATTGGGG 738
Query 719 CTTGTAATTGGTTGATCAACGGACCTAATGGAAGTCTAAGTTATGTGTCAGACTCCATCT 778
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 739 CTTGCAATTGGTTGATCAGCGGACCTAATGGAAGTCTAAGTTATGTCTCAGACTCCATCT 798
Query 779 TCGTTTCACATCATGCAAGAAGTTTTGATTTCCATGGTCTCAAAGAAACCGATGTTTTGA 838
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 799 TCGTTTCACATCATGCAAGAAATTTTGATTTCCATGGTCTCAAAGGAACCGATGTGTTGA 858
Query 839 TTTACTCAGATTTCTCATCCCTCCAATCTGCAGAAGTGACTGAGGATGGTTGTATTTCTC 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 859 TTTACTCAGATTTCTCATCCCTCCAATCTGCAGAAGTGACTGAGAATGGTTGTATTTCTC 918
Query 899 CTGACTCAGATAATAATTATATATCAACAATCAGTGACAACAAGGATTCATTACTAAACA 958
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 919 CTGACCCAGATAATAATTATATATCAACAACCAGTGACAACAAGGATTCATTACTAAACA 978
Query 959 CTGAAGACAGCTTAGAAGAGATGGAGAAACTAGCGTTTGTTTGTTCATGTGCTGCAGAAT 1018
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 979 CTGAAGACAGCTTAGAAGAGATGGAGAAACTAGAGTTTATTTGTTCATGTGCTGCAGAAT 1038
Query 1019 CTGCTGATGCTGGTGGCTCAACCTTGATAACGATTACTAGAATTGGGATAGTTCTGCAGC 1078
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1039 CTGCTGATGCTGGTGGCTCAACCTTGATAACGATTACGAGAATCGGTATAGTTCTGCAGC 1098
Query 1079 TCCTAGAGCTATTGTCAAATTCTCTTGAATCCTCGTCTCTAAAGGTTCCAATCTTTGTAA 1138
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1099 TCCTAGAGCTAATGTCAAATTCTCTTGAATCCTCGTCTCTAAAGGTTCCAATTTTTGTAA 1158
Query 1139 TATCTTCTGTGGCAGAAGAGCTATTGGCATACACAAACACCATACCCGAATGGCTGTGCG 1198
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1159 TATCTTCTGTGGCAGAAGAGTTATTGGCATACACAAACACCATACCCGAGTGGCTGTGCG 1218
Query 1199 AACAACGACAGGAGAAGTTAATTTCAGGAGAACCATCGTTTGGCCATCTTAAATTCATCA 1258
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1219 AGCAACAACAGGAGAAGTTAATTTCAGGAGAACCATCATTTGGCCATCTTAAATTCATTA 1278
Query 1259 AAAACAAGAAGATCCATTTGTTTCCTGCCATTCATTCACCCAACTTAATTTATGCGAACA 1318
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AAGACAAGAAGATCCATTTGTTTCCTGCCATTCATTCACCCAACTTAATTTATGCGAACA 1338
Query 1319 GAACGAGTTGGCAGGAACCATGCATCGTATTTGCTTCTCACTGGAGTTTGCGACTTGGCC 1378
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1339 GAACGAGTTGGCAGGAACCATGCATCATATTTGCTCCTCACTGGAGTTTGCGACTTGGCC 1398
Query 1379 CTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATCCAAAATCATTGCTTGTTCTTGAGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATCCAAAATCATTGCTTGTTCTTGAGG 1458
Query 1439 ATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTAGACCGATAGCGATGAAAATTCTCC 1498
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1459 ATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTAGACCGATAGCAATGAAAATTCTCC 1518
Query 1499 AATGTTCATTTCTTTCTGGAATAAGGTTGCAGAAGCTCCCAACACTTGTATCCGTTTTGC 1558
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1519 AATGTTCATTTCTTTCTGGAATAAGGTTGCAAAAGCTCCCAACACTTCTTTCCGTTTTGC 1578
Query 1559 AGCCAAAGATTTTCTTGGTCCCTGATGCTGTCAATCAGAGGATCAGTTTGGCTGCGATAA 1618
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 1579 AGCCAAAGATTGTCTTGGTCCCTGATGCTGTCAATCAGAGGATCAATTTTGCTGCAATGA 1638
Query 1619 AGACCATCTCAATCCTGAATTACTTTGAGAACAAGACGCTACATGTACCAAGAATTGTAG 1678
|||| || |||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 1639 AGACAATATCAATCCTGAATTACTTTGAAAACAAGACGCTACGTGTACCAAGAATTGCAG 1698
Query 1679 ACAATCCAAGCGTAGAGATTACGACAGACTTGGCCTCCAAATTGAGCTGGAGAAAACTGA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 ACAATCCAAGCGTAGAGATTACGACAGACTTGGCCTCCAAATTGAGCTGGAGAAAACTGA 1758
Query 1739 GGCAACGTGAAAGCTTCGGTATTGCAAGATTGAAAGGTGGGCTTCTGATGGAAGATGGGA 1798
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GACAACGTGAAAACTTTGGTATTGCAAGATTGAAAGGTGGGCTTCTGATGGAAGATGGGA 1818
Query 1799 AACACAGATTAGTTTCCGGGTTGGAGCAGGAAGAAAGTTCAGGAAAGGCTCGGCCATTGA 1858
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 AACACAGATTAGTTTCAGGGTTGGAGCAGGAAGAAAGTTCAGGAAAGGCTCGGCCATTGA 1878
Query 1859 GGCATTGGGGCTCAGTGGCTCCGGAATTACTTTTAGACGCATTACTGAAAATGGGAATAA 1918
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1879 GGCATTGGGGCTCAGTGGCTCCGGAATCACTTTTAGACGCTTTACTGAAAATCAGAATAA 1938
Query 1919 AAGGATCCATCGAACAGAGTACAGGTGATAATGGATCAGAAGACAAGAGTATAATCCATA 1978
|||||||| | |||||||| | |||||| | ||||||||| ||||| |||||||||||||
Sbjct 1939 AAGGATCCTTAGAACAGAGCATAGGTGAGACTGGATCAGACGACAACAGTATAATCCATA 1998
Query 1979 TAGAAAATCCTAACAGTGGCCTGATAGAGTTCTCAGAGATGGGTACTGCTATTATAACAG 2038
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1999 TAGCAAATCCTAGCAGTGGCCTGATAGAGGTCTCAGAGATGGGTACTGCTATTATAACAG 2058
Query 2039 GCGATGAGAATGTAGTCTCTCAGGTCTTCCAGGCGATTGATGGAGTTCTTGACGGTATAT 2098
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2059 ACGATGAGAATGTAGCCTCTCAGGTCTTCCAGGCGATTGATGGAATTCTTGACGGTATTT 2118
Query 2099 AG 2100
||
Sbjct 2119 AG 2120
> Ahg359763 jgi|Araly1|359763|fgenesh1_pg.C_scaffold_908000001
Length=1359
Score = 1775 bits (961), Expect = 0.0
Identities = 1137/1219 (93%), Gaps = 24/1219 (2%)
Strand=Plus/Plus
Query 879 TGAGGATGGTTGTATTTCTCCTGACTCAGATAATA-ATTATATA-T--CAACAATCAGTG 934
|||| |||| ||||||||| |||| | | ||||| | |||||| | |||| | |||||
Sbjct 2 TGAGAATGG-TGTATTTCT-CTGA-GC-G-TAATATACTATATATTCACAAC-AGCAGTG 55
Query 935 ACAACAAGGATTCATTACTAAACACTGAAGACAGCTTAGAAGAGATGGAGAAACTAGCGT 994
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 56 ACAACAAGGATTCATTACTAAACACTGAAGACAGCTTAGAAGAGATGGATAAACTAGAGT 115
Query 995 TTGTTTGTTCATGTGCTGCAGAATCTGCTGATGCTGGTGGCTCAACCTTGATAACGATTA 1054
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 116 TTATTTGTTCATGTGCTGCAGAATCTTCTGATGCTGGTGGCTCAACCTTAATAACGATTA 175
Query 1055 CTAGAATTGGGATAGTTCTGCAGCTCCTAGAGCTATTGTCAAATTCTCTTGAATCCTCGT 1114
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 176 CTAGAATTGGTATAGTTCTGCAGCTCCTAGAGCTAATGTCAAATTCTCTTGAATCCTCGT 235
Query 1115 CTCTAAAGGTTCCAATCTTTGTAATATCTTCTGTGGCAGAAGAGCTATTGGCATACACAA 1174
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 236 CTCTAAAGGTTCCAATTTTTGTAATATCTTCTGTGGCAGAAGAGTTATTGGCATACACAA 295
Query 1175 ACACCATACCCGAATGGCTGTGCGAACAACGACAGGAGAAGTTAATTTCAGGAGAACCAT 1234
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 296 ACACCATACCCGAGTGGCTGTGCGAGCAACGACAGGAGAAGTTAATTTTAGGAGAACCAT 355
Query 1235 CGTTTGGCCATCTTAAATTCATCAAAAACAAGAAGATCCATTTGTTTCCTGCCATTCATT 1294
| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 356 CATTTGGCCATCTTAAATTCATTAAAGACAAGAAGATCCATTTGTTTCCTGCCTTTCATT 415
Query 1295 CACCCAACTTAATTTATGCGAACAGAACGAGTTGGCAGGAACCATGCATCGTATTTGCTT 1354
|||||||||| | || ||||||||||||||||||||||||| ||||||||
Sbjct 416 CACCCAACTT-A---AT--------AACGAGTTGGCAGGAACCATGCATCATATTTGCTC 463
Query 1355 CTCACTGGAGTTTGCGACTTGGCCCTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATC 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CTCACTGGAGTTTGCGACTTGGCCCTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATC 523
Query 1415 CAAAATCATTGCTTGTTCTTGAGGATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CAAAATCATTGCTTGTTCTTGAGGATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTA 583
Query 1475 GACCGATAGCGATGAAAATTCTCCAATGTTCATTTCTTTCTGGAATAAGGTTGCAGAAGC 1534
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 584 GACCGATAGCAATGAAAATTCTCCAATGTTCATTTCTTTCTGGAATAAGGTTGCAAAAGC 643
Query 1535 TCCCAACACTTGTATCCGTTTTGCAGCCAAAGATTTTCTTGGTCCCTGATGCTGTCAATC 1594
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 644 TCCCAACACTTCTTTCCGTTTTGCAGCCAAAGATTGTCTTGGTCCCTGATGCTGTCAATC 703
Query 1595 AGAGGATCAGTTTGGCTGCGATAAAGACCATCTCAATCCTGAATTACTTTGAGAACAAGA 1654
||||||||| ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct 704 AGAGGATCAATTTTGCTGCAATGAAGACAATATCAATCCTGAATTACTTTGAAAACAAGA 763
Query 1655 CGCTACATGTACCAAGAATTGTAGACAATCCAAGCGTAGAGATTACGACAGACTTGGCCT 1714
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 764 CGCTACGTGTACCAAGAATTGCAGACAATCCAAGCGTAGAGATTACGACAGACTTGGCCT 823
Query 1715 CCAAATTGAGCTGGAGAAAACTGAGGCAACGTGAAAGCTTCGGTATTGCAAGATTGAAAG 1774
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 824 CCAAATTGAGCTGGAGAAAACTGAGACAACGTGAAAACTTTGGTATTGCAAGATTGAAAG 883
Query 1775 GTGGGCTTCTGATGGAAGATGGGAAACACAGATTAGTTTCCGGGTTGGAGCAGGAAGAAA 1834
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 884 GTGGGCTTCTGATGGAAGATGGGAAACACAGATTAGTTTCAGGGTTGGAGCAGGAAGAAA 943
Query 1835 GTTCAGGAAAGGCTCGGCCATTGAGGCATTGGGGCTCAGTGGCTCCGGAATTACTTTTAG 1894
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 944 GTTCAGGAAAGGCTCGGCCATTGAGGCATTGGGGCTCAGTGGCTCCGGAATCACTTTTAG 1003
Query 1895 ACGCATTACTGAAAATGGGAATAAAAGGATCCATCGAACAGAGTACAGGTGATAATGGAT 1954
|||| ||||||||||| |||||| |||||||| | |||||||| | |||||| | |||||
Sbjct 1004 ACGCTTTACTGAAAATCGGAATACAAGGATCCTTAGAACAGAGCATAGGTGAGACTGGAT 1063
Query 1955 CAGAAGACAAGAGTATAATCCATATAGAAAATCCTAACAGTGGCCTGATAGAGTTCTCAG 2014
|||| ||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 1064 CAGACGACAACAGTATAATCCATATAGCAAATCCTAGCAGTGGCCTGATAGAGGTCTCAG 1123
Query 2015 AGATGGGTACTGCTATTATAACAGGCGATGAGAATGTAGTCTCTCAGGTC-TTCCAGGCG 2073
|||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||
Sbjct 1124 AGATGGGTACTGCTATTATAACAGACGATGAGAATGTAGGCTCTCAGGTCCTTC-AGGCG 1182
Query 2074 ATTGATGGAGTTCTTGACG 2092
||||||||| |||||||||
Sbjct 1183 ATTGATGGAATTCTTGACG 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5