BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07540.1
Length=2857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478076 jgi|Araly1|478076|fgenesh2_kg.3__777__AT3G07540.1 4170 0.0
> Ahg478076 jgi|Araly1|478076|fgenesh2_kg.3__777__AT3G07540.1
Length=2812
Score = 4170 bits (2258), Expect = 0.0
Identities = 2669/2859 (93%), Gaps = 61/2859 (2%)
Strand=Plus/Plus
Query 3 TAGCATTAAGTCACTCTTTCGTCCTCAGATAGTGCGCATTGCAGAACACAAAATCTCTAC 62
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 1 TAGCATTAAGTCACTCTTTCATCCTCAGATAGTGCGCATTGCAGAACACAAAA-CTCTCC 59
Query 63 AAGAAAACCCCAAAAATGGACGGACTTTGCTACGTCATCTTCATCATCTTCTCCCTGCTA 122
|||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 60 AAGAAAACCCCAAAAATGGACGGACTTTGCTACG---------TCATCTTCTCCCTACTA 110
Query 123 TCCTGCGCTTTCTCTCCCTTATCATACGCCTCTCCGGCCACTTTCAGTCGCCGTCACCTT 182
|| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 111 TCTTGCGCTTCCTCTCCCTTATCATACGCTTCTCCGGCCACTTTCAGTCGCCGTCACCTT 170
Query 183 CTTCAAGCTCCT-GTAACTGATCCTTCCACATTCTCACCGCCGTTCTTCCCACTTTACAG 241
|| ||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 171 CTACAAGCTCCTCCT-ACTGATCCTTCCACATTCTCGCCGCCATTCTTCCCACTTTACAG 229
Query 242 ctccacctctcctcctcctcctccttctccgccgcagcctcttccgcctcccgccCCCAC 301
|||| | || ||||||||||| | | ||| ||||| |||||||||||||||
Sbjct 230 CTCC-TC-CT-CTCCTCCTCCT-C-T-TCCACCGCA---------GCCTCCCGCCCCCAC 274
Query 302 TTTTGCGACATTTCCGGCGAACATCTCCGCTCTCGTCCTCCCTCGCTCCCCTAAACCGCA 361
|||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 275 TTTTGCGACATTCCCGGCGAACATATCCGCCCTTGTCCTCCCTCGCTCCCCTAAACCGCA 334
Query 362 AACTCCTTCCCGTACACTCCTTATTCCTGCTATCTCCGCCGTGCTCGCCGCCGCAACATT 421
|||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
Sbjct 335 AACTTCTTCCCGTACACTCCTTGTCCCTGCTATCTCCGCCGTGCTCGCCGTCGCAACACT 394
Query 422 AATCGCCTTGGCCTT-TTTCTTCTACGGACGGTGGCGAGGGCAAA-CCAGTCATTTCAAA 479
||||||||||||||| |||| ||||||||||||||||||| |||| || |||||||||||
Sbjct 395 AATCGCCTTGGCCTTCTTTC-TCTACGGACGGTGGCGAGGACAAATCC-GTCATTTCAAA 452
Query 480 GATGAATCCAAGAGCTTAGCTTCAGACATTAGCCAATCCCAACAACAAACTCTTCCATGT 539
|| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 453 GACGAATCCAAGAGCTTAGCTTCAG-----A-CCAATCCCAACAACAAACTCTTCCATGT 506
Query 540 CCCCCTCCAAGAAACAACAACACTCAAAACAAACTCTCTGTAGCTCCTTCTACCTCCGAT 599
||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||
Sbjct 507 CCCCCTCCAAGAAACAACACCGCTGAAAACAAACTCTCTGTGGCTCCTTCTACCTCCGAT 566
Query 600 GTTCTCTACCTCGGCAACGTCGTCACTTCCTCCGGGTCGGGTTTTGTTAAACCGGAGTCA 659
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 567 GTTCTCTACCTCGGCAACGTCGTCACTTCCTCCGGGTCGGGTTTCGTCAAACCGGAGTCA 626
Query 660 CCAGATATCTCTCCTCTCCCGCCATTACCTGCCCGTAGCTTCCTCCTGCAACATCACTCT 719
|| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 627 CCGGAGATCTCTCCTCTCCCGCCATTACCTGCTCGTAGCTTCCTCCTGCAACATAACTCT 686
Query 720 GAAGCTAATCTTGAT---GAAGAAGAAGAAGACGACGACTTTTACTCGCCTCTCGCGTCT 776
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GAAGCTAATCTTGATGAAGAAGAAGAAGAAGACGACGACTTTTACTCGCCTCTCGCGTCT 746
Query 777 ATAGCTGGTCAAGAATCACGAGACCGGAGAATCAATCCGTACAGTAACTGTTCTTGCTCT 836
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 747 GTAGCTGGTCAAGAATCACGAGACCGAAGAATTAATCCGTACAGTAACTGCTCTTGCTCT 806
Query 837 ATCTCTTCACACTCGGATTCTCCGGCAATGTCACCGTCAGCTGCGATGTCTCCACCGATG 896
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||
Sbjct 807 ATCTCTTCACACTCGGATTCTCCGGCAATGTCACCGTCCGCTACGATTTCTCCGCCGATG 866
Query 897 AACTCGACGGCTCCACATTGGTCAACTAAC-CAAAACACTCACTCTCCGTCGTCGCCGGA 955
||||| |||||||| |||||||||||| || |||||| |||| |||||||||||||||||
Sbjct 867 AACTCTACGGCTCCTCATTGGTCAACT-ACTCAAAACCCTCAATCTCCGTCGTCGCCGGA 925
Query 956 GAGAACAGTAAGGAACAATAAGAGATATGGT-GGGCAGTCGCTGAGAATGTTTAGCCTCT 1014
|||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||
Sbjct 926 GAGAACAGTAAGGAACAACAAGAGATATGGTGGGGC-GTCTCTGAGAATGTTTAGCCTCT 984
Query 1015 GGAATCAAAATCTAGGGTTTCCAAGAATTTCCTCTGCTTCTACTTCACCAGAGAGAGGTA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GGAATCAAAATCTAGGGTTTCCAAGAATTTCCTCTGCTTCTACTTCACCAGAGAGAGGTA 1044
Query 1075 TGATTAGAACTCCAGACGCATATGCTCGTTCTTCTATGTACTCTTCAGTTTCCACCACGC 1134
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1045 TGATTAGAACTCCTGACGCATACGCTCGTTCTTCTATGTACTCTTCAGTTTCCACTACGC 1104
Query 1135 CGGATCGGTTTTTCCGCAAGGTTCTTGATAGTTCGCCGCCGAGATGGAACGATTTCAGTC 1194
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CGGATCGGTTTTTCCGGAAGGTTCTTGATAGTTCGCCGCCGAGATGGAACGATTTCAGTC 1164
Query 1195 GAAATGTCAAGTCTTTGTTTCTTTCTTCAACTTCTGCATCACCTGCTAGAGATTTTTGTA 1254
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1165 GAAATGTCAAGTCTTTGTTTCTTTCTTCCACTTCTGCGTCACCTGCTAGAGATTTTTGTA 1224
Query 1255 TCAACATCTCTGAATCTTCTAGAAGTTTGAAATCTTCTTGGGAAAAACCAGAGCTTGATA 1314
||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1225 TCAACATCTCTGAGTCTTCAAGAAGTTTGAAATCTTCTTGGGAAAATCCTGAGCTTGATA 1284
Query 1315 CAACTCAACAGAGAGAATCGGCCGCTGCTGCTGTTACTCTTCCTCCTCCACAACGACCAC 1374
||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 1285 CAACTGAACAGAGAGAATCGTC---TGCTGCTGTTACTCTTCCTCCTCCACAACGGCCAC 1341
Query 1375 CACCGGCAATGCCTGAGCCACCTCCTCTTGTGCCACCGTCACAGTCTTTTATGGTTCAGA 1434
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CGCCGGCAATGCCGGAGCCGCCTCCTCTTGTGCCACCGTCACAGTCTTTTATGGTTCAGA 1401
Query 1435 AATCTGGAAAAAAGCTATCTTTCTCGGAGTTACCACAGAGTTGTGGGGAAGGAACAACAG 1494
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1402 AATCTGGAAAAAAACTATCTTTCTCGGAGTTACCACAGAGTTGTTGGGAAGGAACAACAG 1461
Query 1495 ATCGACCTAAGCCAAAGCTGAAACCTTTGCCTTGGGACAAAGTCCGACCAAGTTCTCGTC 1554
| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1462 AGCGACCAAAGCCAAAGCTGAAACCTCTGCCTTGGGACAAAGTCCGACCAAGTTCTCGCC 1521
Query 1555 GGACAAATACTTGGGACCGTCTTCCATACAACTCTTCAAATGCTAACTCTAAACAGAGAA 1614
|| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1522 GGGCAACTACTTGGGACCGTCTTCCGTACAACTCTTCAAATGCTAACTCAAAACAGAGAA 1581
Query 1615 GTCTTAGCTGTGATCTTCCGATGCTAAATCAAGAGAGCAAAGTTTTGGATCCAAGGAAGA 1674
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 GTCTTAGCTGTGATCTTCCAATGCTAAATCAAGAGAGCAAAGTTTTGGATCCAAGGAAGA 1641
Query 1675 GTCAAAATGTTGCTGTTCTGCTTACAACACTTAAGCTCACCACAAATGATGTTTGTCAGG 1734
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1642 GTCAAAATGTTGCTATTCTGCTTACAACACTCAAGCTTACCACAAATGATGTTTGTCAGG 1701
Query 1735 CCCTTCGAGATGGTCACTATGATGCACTTGGAGTTGAGCTTCTTGAGAGTTTAGCAAGAG 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 CCCTTCGAGATGGTCACTATGATGCACTTGGAGTTGAGCTTCTTGAGAGTTTAGCAAGAG 1761
Query 1795 TGGCACCGAGCGAAGAAGAAGAGAAGAAGTTGATTAGCTATAGTGATGATTCAGTGATCA 1854
||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1762 TGGCACCAAGCGAAGAAGAAGAGAAGAAGTTGAAGAGCTATAATGATGATTCAGTGATCA 1821
Query 1855 AGCTTGCTCCATCAGAGAGGTTTCTCAAGGAATTGCTTAATGTTCCTTTCGTGTTCAAAC 1914
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1822 AGCTTGCCCCATCAGAGAGGTTTCTCAAGGAATTGCTTAATGTGCCTTTCGTGTTCAAAA 1881
Query 1915 GGGTTGATGCATTGCTCTCTGTTGCTAGTTTTGACTCCAAAGTCAAAC-ACTTGAAAAGA 1973
||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |||
Sbjct 1882 GGGTTGATGCATTACTCTCTGTTGCTAGTTTTGACTCAAAAGTCAA-CTACTTGAATAGA 1940
Query 1974 TCATTCAGCGTTATACAGGCTGCTTGTGAGGCACTGCGAAATAGCAGAATGTTATTGAGA 2033
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 TCATTCGGCGTTATACAGGCTGCTTGTGAGGCACTGCGAAATAGCAGAATGTTATTGAGA 2000
Query 2034 CTTGTTGGAGCTACCTTGGAGGCTGGAATGAAGAGCGGGAATGCTCATGACTTCAAACTT 2093
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2001 CTTGTTGGAGCTACCTTGGAGACAGGAATGAAGAGCGGGAATGCTCATGACTTCAAACTT 2060
Query 2094 GAGGCGCTCCTCG-GCCTTGTCGATATCAAATCGTCAGATGGAAGAACCAGTATCTTGGA 2152
|||| ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2061 GAGGTGCTCCTCAAGC-TTGTCAATATCAAATCGTTAGATGGAAGAACCAGTATCTTGGA 2119
Query 2153 TTCTGTTGTACAGAAGATCACTGAATCAGAAGGAATCAAAGGGCTACAAGTTGTCAGAAA 2212
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2120 TTCTGTTGTACAGAAGATCACTGAATCAGAAGGCTTCAAAGGGCTACAAGTTGTCAGAAA 2179
Query 2213 TCTCAGTTCAGTTCTTAACGATGCCAAGAAATCTGCAGA-GTTGGACTACGGTGTTGTAA 2271
|||||||||||||||| |||||| ||||||||||||||| || |||||| |||||| |||
Sbjct 2180 TCTCAGTTCAGTTCTTGACGATGTCAAGAAATCTGCAGAAGT-GGACTATGGTGTTTTAA 2238
Query 2272 GAAT-GAATGTGTCAAAGCTTTATGAAGAAGTTCAGAAAATTAGTGAGGTTCTGCGACTG 2330
||| || ||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2239 GAAGCGA-TGTCTCAAAGCTTTATGAAGAAGTTCAGAAAATTAGTGAGGTTCTACTACTG 2297
Query 2331 TGTGAGGAGACTGGACACAGTGAGGAACACCAATGGTGGAAATTCAGGGAGTCGGTGACC 2390
||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 2298 TGTGAGGAGGCTGGACATAATGAGGAGCACCAATGGTGGAAATTCAGGGAGTCGATGACC 2357
Query 2391 AGATTCTTGGAAACTGCTGCTGAGGAGATTAAAAAGATTGAAAGAGAAGAAGGTTCCACG 2450
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2358 CGATTCTTGGAAACTGCTGCAGAGGAGATTAAAAAGATTGAAAGAGAAGAAGGTTCCACG 2417
Query 2451 CTCTTTGCAGTGAAAAAGATAACAGAGTATTTCCATGTTGATCCTGCAAAGGAAGAAGCT 2510
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2418 CTCTTTGCAGTGAAAAAGATAACAGAGTATTTCCATGTTGATCCAGCAAAGGAAGAAGCT 2477
Query 2511 CAGCTATTGAAAGTATTCGTAATCGTGAGAGACTTTTTAAAAATTCTAGAGGGAGTATGC 2570
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 CAACTATTGAAAGTATTCGTAATCGTGAGAGACTTTTTAAAAATTCTAGAGGGAGTATGC 2537
Query 2571 AAGAAGATGGAGGTGACTAGTTCTCTGGCTTAGATGTC--GTGTCATAAAGATCCTAGGA 2628
||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 2538 AAGAATATGGAGGTGACTAGTACTCTGGCTTAGATTTCTTGTGTCATAAAGATCCTAGGA 2597
Query 2629 TCTGTCCAAGACTAATGTATTGTGTTACCTTTATAAGTTATGTACTTATATGTTTGTATG 2688
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2598 TCTGTCCAAGACTAATGTATTGTGTTACCT--ATAAGTTATGTACTTATATGTTTGTATG 2655
Query 2689 AATCGTTGGAGAGCTACGTTGTATGTAAATAGATGCAGCTTTTACAAACATATAAGTGGC 2748
||||||||||| |||||||||||||| | ||||||| |||||| |||||||||| ||||
Sbjct 2656 AATCGTTGGAG--CTACGTTGTATGTAGAGAGATGCAACTTTTATAAACATATAAATGGC 2713
Query 2749 TTGAAGACCATATAATATCTCAAACTCAGAGATCCACTTTATTCTTCTTCTTTGTTATTT 2808
|||||| |||||||||||| |||||||||| ||||| | ||||||||||||||||||| |
Sbjct 2714 TTGAAGGCCATATAATATCCCAAACTCAGATATCCAGTATATTCTTCTTCTTTGTTATAT 2773
Query 2809 ATTACATTTTCTTAGTTTACTGGTTCTTTAAGAATCCTT 2847
|||||||||||||| |||||| |||||||||||||||||
Sbjct 2774 ATTACATTTTCTTATTTTACTTGTTCTTTAAGAATCCTT 2812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107833483595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5