BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07565.4
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478080 jgi|Araly1|478080|fgenesh2_kg.3__781__AT3G07565.3 1615 0.0
> Ahg478080 jgi|Araly1|478080|fgenesh2_kg.3__781__AT3G07565.3
Length=1231
Score = 1615 bits (874), Expect = 0.0
Identities = 1132/1245 (91%), Gaps = 64/1245 (5%)
Strand=Plus/Plus
Query 6 GAAGCAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAATCTCCCCATCAtctctctctctc 65
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1 GAAGAAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAATCTCTCCATC-TCTCTCTC-CT- 57
Query 66 cctctctctGTTCCTATCCCGGCGAATTCATATCTGAATT-TCCCAAAATTCAAACTTTT 124
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 58 --TCTCTCTGTTCCTATCCCGGCGAATTCATATCAGAATTGCCCCAAAATTCAAAC-TTT 114
Query 125 CCGGTGGAATTATTTTAGGAAACC-AAGTGACTTCTTAAGCTCCAAAAATTGGGTATTTA 183
|||||| ||||||||||||||||| ||||| ||| || ||||| |||||||||||||||
Sbjct 115 CCGGTGAAATTATTTTAGGAAACCAAAGTGGCTT-TTTAGCTCGAAAAATTGGGTATTTG 173
Query 184 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCGTCGGCGACGCAGAAG 243
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 174 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCTTCGGCTACACAGAAG 233
Query 244 GTATCGTCTTCTTCAGCGGCGGCGGCGAATGGCGCTGCTGTGAATTCCGTCGATAATGGT 303
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |
Sbjct 234 GTATCGTCTTCTTCAGCGGCGGCTACGAATGGCGCAGCTGTGAATTCGGTCGATAA---T 290
Query 304 GGAAATACAGGCGCGGCGGCGGATAATTCACAGACGATTGGCGCGTTGAGGCATAATCCA 363
|| | ||| || | ||| || ||||||||||||||||||||||
Sbjct 291 GG---T-----------GGC----AA--CGCAGGCG-TTGGCGCGTTGAGGCATAATCCT 329
Query 364 GGGATCTCTACCGATTGGACTCTTGAGGAACAATCTCTATTGGAAGATTTGCTTGTCAAG 423
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 330 GGGATCTCTACCGATTGGACTCATGAGGAACAATCTCTATTGGAAGATTTACTTGTCAAG 389
Query 424 TACGCGACAGAACCGTCGGTTTTTCGATATGCGAAGATTGCTATGAAAATGAAAGATAAG 483
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 390 TACGCGACCGAACCTTCGGTTTTTCGATATGCGAAGATTGCGATGAAAATGAAGGATAAG 449
Query 484 ACTGTTCGAGATGTTGCCCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 543
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACTGTTCGAGATGTTGCGCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 509
Query 544 AGGAAAGAAGATCATTCCTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAT 603
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AGGAAAGAAGACCATTCGTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAG 569
Query 604 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTTCATCCTAATGGTCCTTCTTATGCTCCG 663
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 570 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTGCATCCTAATGGTCCTTCTTATGCTCCA 629
Query 664 CCTATGATGCCTATCGATACTGATGATGGTATTTCATATAAAGCTATTGGTGGTGTGAGT 723
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 630 CCTATGATGCCTATCGATACTGATGATGGTATTTCGTATAAAGCTATTGGTGGTGTGAGT 689
Query 724 GGAGATCTTCTCGAGCAAAATGCTCAAATGTTCAATCAACTTTCAACAAATTTCTCAGCT 783
|||||||||||||||||||||||||||||| | |||| | | || || |||
Sbjct 690 GGAGATCTTCTCGAGCAAAATGCTCAAATG-T---TCAA---T---C-AAGTT-TCA--- 734
Query 784 TTCCAGGTGAATTCAACTTCCA-CTTTTCATCTTCTACATGAGAATGTCAATATCTTGTG 842
| || |||| | | || | |||| | ||||||||||||||||||||||||||
Sbjct 735 -T-CA----AATT--TC-T-CAGC-TTTC--CAGCTACATGAGAATGTCAATATCTTGTG 781
Query 843 CAAAGCTCGAGACAATATCCTTGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 902
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 CAAAGCTCGGGACAATATCCTCGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 841
Query 903 GAAGCAGATGCCACCTCTTCCGGTGAAGTTGAATGAGGAGCTGGCAAATTCGATCCTCCC 962
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 842 GAAGCAGATGCCACCTCTTCCGGTGAAGGTGAATGAGGAGCTGGCAAACTCGATTCTCCC 901
Query 963 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGGCGATAGATGGTTGGTTCTGACCAAGG 1022
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 902 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGTCGACCTATGGTTGGTTCTGACCAAGG 961
Query 1023 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1021
Query 1083 CACTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1142
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CAGTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1081
Query 1143 TTACAATTTCCGTCAGTCTCTGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1202
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 T-ACAATTTCTGTCAGTCTATGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1140
Query 1203 TCGCGTATCGTT-GTTTAGGATGTGAATAGATTTCAATTGGTATG 1246
|||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 TCGCATATCGTTTGTTTAGGATGTGAATAGATTTCAATTGGTATG 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5