BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07570.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903655 jgi|Araly1|903655|Al_scaffold_0003_783 1712 0.0
> Ahg903655 jgi|Araly1|903655|Al_scaffold_0003_783
Length=1404
Score = 1712 bits (927), Expect = 0.0
Identities = 1050/1110 (95%), Gaps = 5/1110 (0%)
Strand=Plus/Plus
Query 91 ATGAAGCTTTATTCTGTTTCCATCATCATCTTCGTCTTAATTGCTCT-CTCCACCATA-- 147
||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||
Sbjct 1 ATGAAGCTTTATTCTGTTTCCTTGGTCATCTTCGTCTTAATTGCT-TACTCCACCATAGT 59
Query 148 -GTTAATGCTCAACAAGCTGCTACAGATTCCTGCAACTCAACTCTACCTCTCAACGACCT 206
|||||||| ||||||||||||| |||||||||||| ||||| |||||||||||| ||||
Sbjct 60 TGTTAATGCACAACAAGCTGCTAGAGATTCCTGCAATTCAACACTACCTCTCAACAACCT 119
Query 207 CACCTTCAACACCAGCCTCCTTCAATGCACCGAAGCTTGGACTCCCCAAAATTTCATCCT 266
|||||| ||| |||||||||||||||||| |||||||||| || |||||||| ||||||
Sbjct 120 CACCTTTAACGTCAGCCTCCTTCAATGCACAGAAGCTTGGAGTCTCCAAAATTACATCCT 179
Query 267 CCGATATGCAAGAACGGCAGAGAACACATGGAGCTTTATCTTATCGGCGCCGGATTCAAG 326
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCGATATGCAAGAACGGTAGACAACACATGGAGCTTTATCTTATCGGCGCCGGATTCAAG 239
Query 327 CGCTTTCATCGGGATCGGATTCTCTACCAACGGTCAGATGATCGGAAGCAGCGCGATCGT 386
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGCTTTCATCGGGATCGGATTCTCAACCAACGGTCAGATGATCGGAAGCAGCGCGATCGT 299
Query 387 TGGTTGGATACCTTCCGACGGCGGTTCCGGGACTGTGAAACCGTACTTGCTCGGTGGGAA 446
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 300 CGGTTGGATACCTTCCGACGGCGGTTCCGGGACTGTCAAACCGTACTTGCTTGGAGGGAA 359
Query 447 ATCTCCCGGAGAGGTTAATCCTGACCAAGGAGATCTAACGATCGTCAACGGCTCGTTGAA 506
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 ATCTCCCGGCGAGGTGAATCCTGACCAAGGAGATCTAACCATCGTCAACGGCTCGTTGAA 419
Query 507 GATCGAATCAGTGTCGTCGCGTCTTTACATGAGATTTCAATTGACGGCGACGCTGCCGCG 566
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 420 GATCGAATCAGTGTCGTCGCGTCTTTACATGAGTTTTCAACTGACGGCGACGCTGCCGCG 479
Query 567 GCAGAGTCTTCTTTACGCTGTGGGACCTGCCGGATTCTTCCCATCTTCGCCGGATTTTAG 626
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 ACAGAGTCTTCTTTACGCTCTGGGACCTGCCGGCTTCTTCCCATCTTCGCCGGATTTTAG 539
Query 627 GTTGAGAGAGCACCGCTTCGTGACCACCACGACCATCAATTATAATACAGGTTCGCAAAG 686
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 ATTGAGAGAGCACCGCTTCGTGACCACCACGACCATCAATTATATTACAGGTTCGCAAAG 599
Query 687 TGTGGTTAAAGTTTCACCACACTCTAAGCTAAAGAAGACACATGGGCTAATGAACATGTT 746
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGGTTAAAGGTTCACCACACTCTAAGCTAAAGAAGACACATGGGCTAATGAACATGTT 659
Query 747 CGGCTGGGGAATATTGATTATCGTTGGCGCCATAGTGGCTCGACATATGAAGCAATGGGA 806
|||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||
Sbjct 660 CGGCTGGGGAATATTGATTATCATTGGAGCCATAGTGGCTCGACACATGAAGCAGTGGGA 719
Query 807 CCCCACTTGGTTCTATGCCCATATCGCTCTCCAAACCACTGGTTTTCTCCTCGGTTTAAC 866
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 CCCCACTTGGTTCTATGCCCATATCGCTCTCCAAACCACTGGTTTTCTTCTCGGTTTAAC 779
Query 867 TGGTGTCATTTGCGGTTTGGTTCTTGAAAACCGGCTCAAGGCCAATAATGTTTCCAAGCA 926
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TGGTGTCATTTGCGGTTTGGTTCTTGAAAACAGGCTCAAGGCCAATAATGTTTCCAAGCA 839
Query 927 CAAAGGCCTCGGGATAACCATACTTGTCATGGGCGTTCTTCAGATGCTGGCATTGCTAGC 986
||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 840 CAAAGGCCTTGGGATAACCATACTTGTCAAGGGCGTTCTCCAGATGCTTGCATTGCTAGC 899
Query 987 TCGGCCGGATAAGCAATCGAAATACAGAAAATATTGGAATTGGTATCATCATAACATAGG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCGGCCGGATAAGCAATCGAAATACAGAAAATATTGGAATTGGTATCATCATAACATAGG 959
Query 1047 AAGACTTCTGATCATACTGGCTATTTCTAACATCTTCTACGGTATTCATTTGGCTAAAGC 1106
|||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 AAGAATTATGATCATACTCGCTATTTCTAACATCTTCTACGGTATACATTTGGCTAAAGC 1019
Query 1107 TGGAACTAGTTGGAATGGTGGTTACGGTTTTGCGGTCGCGGTCTTGGCCTTGACGGCTAT 1166
||| ||||||||||||| |||||||||||||| |||||||| ||||||||| | |||||
Sbjct 1020 TGGTTCTAGTTGGAATGGCGGTTACGGTTTTGCAGTCGCGGTATTGGCCTTGGCAGCTAT 1079
Query 1167 TGGATTAGAAGTTAGAAAGTTCTTGAAAAA 1196
||||||||||||||||||||| ||||||||
Sbjct 1080 TGGATTAGAAGTTAGAAAGTTATTGAAAAA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5