BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07580.2

Length=757
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478085 jgi|Araly1|478085|fgenesh2_kg.3__786__AT3G07580.1          606    6e-173


> Ahg478085 jgi|Araly1|478085|fgenesh2_kg.3__786__AT3G07580.1
Length=717

 Score =  606 bits (328),  Expect = 6e-173
 Identities = 399/433 (92%), Gaps = 6/433 (1%)
 Strand=Plus/Plus

Query  154  TCACAGGAAGGCTTCTGGGAATCGCCGGAAGTCGGGAGATCGAACAAGTAGCCAACAGAA  213
            ||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  120  TCAAAGGAAGCCTCCTGGGAATCGTCGGAAGTCGGGAGATCGAACAAGTAGCCAACAGAA  179

Query  214  CAACGATAATGAGAGAAATCAGCCTCCTGCTACTGGTCTTCAGATGGAAAACATATCCCA  273
            |||||||  |||||||||||| ||||||| |||| |||||||||||||||||| | ||||
Sbjct  180  CAACGATCCTGAGAGAAATCAACCTCCTGTTACTAGTCTTCAGATGGAAAACAAACCCCA  239

Query  274  GACCCAGAGGATAATAACAATAAAGGACTGCTCCAGGAGTGCAGCTTATCAGCTCATGAG  333
            ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||
Sbjct  240  GACCCAGAGGATAATAACAGTAAAGGATTGCTCTAGGAGTGAAGCTTATCAGCTCATGAG  299

Query  334  CCAACGATGGGCAGCTGAAATGCATCAATACGACGACCCAACTGTGGATCTATCTGTGCG  393
            ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||
Sbjct  300  CCAACGATGGGCAGCTGCAATGCATCAATACAACGACCCTACTGTGGATCTATCTGAGCG  359

Query  394  ACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGATCCTGGCTGC  453
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  ACCAATTATGTTCTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGATCCTGGCTGC  419

Query  454  AGCAAACAAGACATTACCTCCTCCATCG----C-C-AACGGATTACATGACTGAAGTGCG  507
            ||||||||||||||| ||||||||||||    | | ||||||||||||||||||||||||
Sbjct  420  AGCAAACAAGACATTGCCTCCTCCATCGATATCGCCAACGGATTACATGACTGAAGTGCG  479

Query  508  GCGAGGATTGCTGATGCCAAAAGCCAACAATTGAATGGTTCTTGTTCAGATGATGGAGCC  567
             |||||||||||||||||||||  |||||| ||||||||| |||| ||||||||||||||
Sbjct  480  CCGAGGATTGCTGATGCCAAAATTCAACAACTGAATGGTTTTTGTCCAGATGATGGAGCC  539

Query  568  CATATAGACTAGT  580
            |||||||||||||
Sbjct  540  CATATAGACTAGT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27905975244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5