BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07590.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903657 jgi|Araly1|903657|Al_scaffold_0003_785 486 7e-137
> Ahg903657 jgi|Araly1|903657|Al_scaffold_0003_785
Length=309
Score = 486 bits (263), Expect = 7e-137
Identities = 281/289 (97%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 62 ATGAAGCTCGTCAGGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAG 121
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGCTCGTCAGGTTTTTGATGAAGTTAAACAATGAAACTGTGTCAATCGAGCTGAAG 60
Query 122 AATGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTG 120
Query 182 AAGACAGTGAAGATGAGCCTGAAGGGGAAAAACCCAGTAAC-ACTTGATCATCTTAGCTT 240
||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 121 AAGACAGTGAAAATGAGCCTCAAGGGGAAAAACCCAGTAACTA-TTGATCATCTTAGCTT 179
Query 241 GAGGGGTAATAATATTCGCTACTACATTCTTCCTGATAGCTTGAACCTCGAGACTTTACT 300
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGGGGTAACAATATCCGCTACTACATTCTTCCTGATAGCTTGAACCTCGAGACTTTACT 239
Query 301 TGTGGAAGACACTCCTAGAGTTAAACCTAAGAAGCCTGTTGCTGG-GAA 348
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 TGTGGAAGACACTCCTAGAGTTAAACCTAAGAAGCCTGTTGCTGGAGAA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5