BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07600.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478087 jgi|Araly1|478087|fgenesh2_kg.3__788__AT3G07600.1 442 2e-123
Ahg948560 jgi|Araly1|948560|scaffold_800447.1 403 8e-112
> Ahg478087 jgi|Araly1|478087|fgenesh2_kg.3__788__AT3G07600.1
Length=599
Score = 442 bits (239), Expect = 2e-123
Identities = 277/295 (94%), Gaps = 3/295 (1%)
Strand=Plus/Plus
Query 73 AGCAAAAGATCCTGATAAGAATTGCTATGACTGATGACACAACTCGAGCAAAGGCAATGA 132
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 1 AGCAAAAGATCCTGCTAAGAGTTGCTATGACTGATGACACAACTAGAGCAAAAGCAATGA 60
Query 133 AAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAAGGGAGATCACAGGAACC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAAGGGAGATCACAGGAACC 120
Query 193 AGATTGAGGTGACCGGTGTTGAAGTCGATATGATTGCTCTAATCAACACACTCAGGAAAA 252
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 121 AGATTGAGGTGACCGGTGTTGAAGTTGATATGATCGCTCTAATCAACGCACTCAGGAAAA 180
Query 253 AAGTTGCATTTGCGGAGCTTGTTAGCGTAGCTAAAGTTGAACCACCTAAGGATGGTGACa 312
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 181 AAGTTGCATTTGCAGAGCTTGTTAGCGTAACTAAAGTTGAACCACCCAAGGATGGTGACA 240
Query 313 aaaagccagaagaagaaaagaaacccgaagagaagaaacccgaagagaagaaacc 367
|| |||| | ||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 241 AAGAGCC-G--GAAGAAAAGAAACCCGAAGAGAAAAAACCTGAGGAGAAAAAACC 292
Score = 420 bits (227), Expect = 8e-117
Identities = 291/321 (91%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 406 AAAAACCTGAGCCATGTTATCAACCATGGCCTCATGATGGATATGGTGTGCCATCTTCCT 465
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 286 AAAAACCCGAGCCATGTTGTCAACCATGG---C---ATGGATATGGTGTGCCATCTTCCT 339
Query 466 ATCCCTACCCGTGTGATCCCTACAATCAGATCGGGGAACCCGTTTACAATCAAGATCCCA 525
||||||| ||||||||||||||| |||||||||||||||| || ||||| ||||||||||
Sbjct 340 ATCCCTATCCGTGTGATCCCTACCATCAGATCGGGGAACCTGTCTACAACCAAGATCCCA 399
Query 526 ATTGCAGGATCATGTGAGATAGGTTTCATGTGGAAGATTAACGGAGGAGATAGCAGTTTT 585
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 400 ATTGCAGAATCATGTGAGATAGGTTTCAAGTGGAAGACTAACGGAGGAGATAGCA-TTTT 458
Query 586 TCTATACTAAGATTGTCAACATGTTAATGCAATTTGATAGTCAGATTTGTTAAATGAATA 645
||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||
Sbjct 459 TCTATACTAAGATTGTCAACAAGTTAATGCACTTTGATAGTCAGATTTTTTACATGAATA 518
Query 646 AAAA-GTCTTGAGCTATCAGTATCACACAAATTCTCTACTTGTAGATGCTCTTATAACAT 704
|||| | |||||||| ||| | |||||||||||||||||||||||||| |||||||||
Sbjct 519 AAAAAGCCTTGAGCTCTCAAAACCACACAAATTCTCTACTTGTAGATGCGATTATAACAT 578
Query 705 GTAAAGCCAAATCTTGTTATC 725
||||||| |||||||||||||
Sbjct 579 GTAAAGCTAAATCTTGTTATC 599
> Ahg948560 jgi|Araly1|948560|scaffold_800447.1
Length=302
Score = 403 bits (218), Expect = 8e-112
Identities = 240/251 (96%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 56 AGAAGACAATAACATGAAGCAAAAGATCCTGATAAGAATTGCTATGACTGATGACACAAC 115
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 9 AGAAGACAAGAACATGAAGCAAAAGATCCTGCTAAGAGTTGCTATGACTGATGACACAAC 68
Query 116 TCGAGCAAAGGCAATGAAAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAA 175
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TAGAGCAAAAGCAATGAAAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAA 128
Query 176 GGGAGATCACAGGAACCAGATTGAGGTGACCGGTGTTGAAGTCGATATGATTGCTCTAAT 235
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 129 GGGAGATCACAGGAACCAGATTGAGGTGACCGGTGTTGAAGTTGATATGATCGCTCTAAT 188
Query 236 CAACACACTCAGGAAAAAAGTTGCATTTGCGGAGCTTGTTAGCGTAGCTAAAGTTGAACC 295
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 189 CAACACACTCAGGAAAAAAGTTGCATTTGCAGAGCTTGTTAGCGTAACTAAAGTTGAACC 248
Query 296 ACCTAAGGATG 306
||| ||| |||
Sbjct 249 ACCCAAGCATG 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5