BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07610.3
Length=3266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478089 jgi|Araly1|478089|fgenesh2_kg.3__790__AT3G07610.1 2891 0.0
Ahg331156 jgi|Araly1|331156|fgenesh1_pm.C_scaffold_8000499 887 0.0
Ahg921535 jgi|Araly1|921535|scaffold_102816.1 268 1e-70
> Ahg478089 jgi|Araly1|478089|fgenesh2_kg.3__790__AT3G07610.1
Length=3048
Score = 2891 bits (1565), Expect = 0.0
Identities = 1893/2045 (93%), Gaps = 47/2045 (2%)
Strand=Plus/Plus
Query 122 GAGAACGGACGCGGTGGTCTCCGTAGGCATCGGAGGGTTTCTACGAAGCTGGCGAATTAC 181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 16 GAGAACGGACGCGGTGGTCTCCGTAGGCAGCGGAGGGTTTCTACGAAGCTGGCGAATTAC 75
Query 182 GTAGATCCTCCGACTGACGACGAAGAAGATGGAGGA-CC--CAAGCGAAAGGGCAAAAGG 238
|||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 76 GTAGATCCTCCGACCGACGACGAAGAAGATGGAGGACCCAACAAGCGAAAGGGCAAAAGG 135
Query 239 GGTGGAAATAGGG-CTCCGAAAAAGACACCGAAGAAAGACGAGGAGATGCAAAAGAACGA 297
|||| | || ||| ||| |||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 136 GGTGTATAT-GGGCCTCGGAAAAAGACAGCGAAGGAAGACGAGGAGAAGCAAAAGAACGA 194
Query 298 AATTGATGAAGCAAACCGAGTCACTGGTCTGGTGAAGGAAAAAAGAGCCGCGACTAAGAT 357
|||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 195 AATTGATGAAGCAAACGGAGTCACTGGTCTGGTCAAGGAAAAGAGAGCCGCTACTAAGAT 254
Query 358 TCTGAATCGCAAAGACTCCATTATTGAAGTAGGAGAAGCTTCTGGAAGCATGCCCAAGGA 417
| |||| ||||||| || | ||| | | |||||||||||||||| ||||| ||
Sbjct 255 TGTGAAAGGCAAAGA--CC-TCATT--ACT----GAAGCTTCTGGAAGCAAGCCCATGGT 305
Query 418 AGTAAAGGGAATTAGGATTGGGAA-AAGGAAGGGA-GAAATCGATGGTGAGATTCCAACT 475
|| |||||||| |||| | || |||| | | | ||||||||||||||||||||||||
Sbjct 306 AGCAAAGGGAAAAAGGACT---AAGAAGG-A-GAATGAAATCGATGGTGAGATTCCAACT 360
Query 476 AAGCCGGGCAAGAAGCCAAAGACTACAGTAGACCCGAGAATCATTGGTTACAGACCGGAC 535
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AAGCCGGGCAAGAAGCCCAAGACTACAGTAGACGAGAGAATCATTGGTTACAGACCGGAC 420
Query 536 AATATGTGCCATCAATGTCAAAAGAGCGATAGGATTGTTGAACGGTGTCAGACCTGCAAT 595
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATATGTGCCACCAATGTCAAAAGAGCGATAGGATTGTTGAACGGTGTCAGACCTGCAAG 480
Query 596 AGTAAGCGTTATTGTCATCCATGCTTGGACACTTGGTACCCCCTTATAGCAAAAGAAGAT 655
|| |||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||
Sbjct 481 AGCAAGCGTTATTGTCACCCTTGCTTAGACACTTGGTATCCACTTATAGCAAAAGAAGAT 540
Query 656 GTTGCCAAGAAATGCATGTTCTGCTCTAGTACTTGCAATTGCAGAGCATGCTTGCGTCTA 715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GTTGCCAAGAAATGCATGTTCTGCTCTAGTATTTGCAATTGCAGAGCATGCTTGCGTCTA 600
Query 716 GATACTAAATTGAAAGGGATAAATTCGAACCTCATAGTCAGCGAGGAAGAAAAGGTCCAA 775
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||
Sbjct 601 GATACTAAATTGAAAGGGATAAATTCGAAGCTCATCCTCAATGAGGAAGAAAAGGTTCAA 660
Query 776 GCCTCTAAGTTTATTCTGCAGAGCCTTCTCCCACATCTGAAAGGAATAAATGATGAACAA 835
|||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 661 TCCTCTAAGTTTATTTTGCGGAGTCTTCTCCCACATCTAAAAGGAATAAATGATGAACAA 720
Query 836 GTTGCTGAGAAGGAAGTTGAGGCCAAAATATACGGACTGAAGTTTGAAGAGGTGAGGCCC 895
|| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 721 GTCGCAGAGAAGGAAGTTGAGGCCAAAATATCCGGACTGAAGTTTGAAGAGGTTAGGCCC 780
Query 896 CAAGACGCTAAAGCTTTCCCTGATGAAAGACTATACTGTGATATCTGCAAGACTTCTATC 955
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAGACGCTGAAGCTTTCCCCGATGAAAGACTATACTGTGATATCTGCAAGACTTCTATC 840
Query 956 TATGATCTCCATAGGAATTGCAAGTCCTGTAGTTTTGATATCTGCCTTAGCTGTTGCCTT 1015
|||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||
Sbjct 841 TATGATCTCCATAGGAATTGCAAGGCATGTAATTGTGATATCTGCCTTAGCTGTTGCCTT 900
Query 1016 GAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGTGTCTTGGAATTATATTAAC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGTGTCTTGGAATTATATTAAC 960
Query 1076 CGAGGTTTAGAGTATGAACATGGACAAGAAGGAAAAGTGATTGAAAAGCCGGCGAATAAG 1135
|||||||||||||||||||||||| |||||||| |||| ||||||||| ||| ||||| |
Sbjct 961 CGAGGTTTAGAGTATGAACATGGAGAAGAAGGAGAAGTTATTGAAAAGGCGGAGAATACG 1020
Query 1136 CTAGATGATAAG-T------T-----GAAAGATAAGCTGGATGGTAAGCCGGATGATAAG 1183
|||||||||||| | | ||||||||||| ||||| ||||| ||||||||||
Sbjct 1021 CTAGATGATAAGCTGAAAGATAAGCCGAAAGATAAGCCGGATGATAAGCTGGATGATAAG 1080
Query 1184 CCGAAGGGTAAGCCAAAGGGTAGGCCAAAGGGTAAGCCGGATGATAAGCC---------G 1234
||||||||||||||||||| || || ||||||| ||||||||||||||| |
Sbjct 1081 CCGAAGGGTAAGCCAAAGGTTAAACCGAAGGGTAGGCCGGATGATAAGCCGAAGGGTAAG 1140
Query 1235 ---AAGGGTAAACTGAAGGGTAAGCAGGATGATAAACCGGATGATAAGCCAGATGAG-AA 1290
|||||||||||||||||||||||||||||||||||||||| |||||| || | | ||
Sbjct 1141 CCAAAGGGTAAACTGAAGGGTAAGCAGGATGATAAACCGGATGTTAAGCC-GAAGGGTAA 1199
Query 1291 GCCGGTTAATACAGACCATATGAAGTACCCTTCTCTGTGGAAAGCAAATGAAGCTGGGAT 1350
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 GCCGATTAATACAGACCATATGAAGTACCCTTCTATGTGGAAAGCAAATGAAGCTGGGAT 1259
Query 1351 CATTACTTGTTGTTGTGGTGCTGGGGAGTTAGTGCTGAAACGACTACTTCCGGATGGTTG 1410
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1260 CATTACTTGTTATTGTGGTGCTGGGGAGTTAGCGTTGAAACGACTACTTCCGGATGGTTG 1319
Query 1411 GATATCTGAGTTGGTCAACAGAGTTGAAAAAACTGCTGAAGCTGGCGAGCTTTTGAATTT 1470
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 1320 GATATCTGAGTTGGTCAACAGAGTAGAAAAAACTGCTGAAGCTAGTGAGCTTTTGAATTT 1379
Query 1471 ACCTGAAACGGTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACATATTGACATAGA 1530
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 ACCTGAAACGGTTTTGGAGCAATGCCCTTGTTCTAACTCTGACAGTCATATTGACATAGA 1439
Query 1531 CAGCTGTAATTTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTTTACTC 1590
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1440 CAGCTCTAATTTGTTGAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTATACTC 1499
Query 1591 TCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAA 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAA 1559
Query 1651 AGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTAAGCTGGGAACC 1710
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1560 AGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCAACATCTGGTTTAAGCTGGGAACC 1619
Query 1711 AATGGTAATGCATCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGGATCACTTAAGGA 1770
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1620 AATGGTAATGTTTCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGAAACACTTACGGA 1679
Query 1771 TGTTGTTGCTGTTGATTGTTTGGACTTCTGTGAGGTAAAAGTTAATCTTCATGAATTTTT 1830
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1680 TGTTGAAGCTGTTGATTGTTTGGACTTCTGTGAGGTAAAAGTTACTCTTCATGAATTTTT 1739
Query 1831 TACTGGATACACGGATGGCCGATATGATCGAATGGGTTGGCCACTAGTTCTGAAACTGAA 1890
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1740 TACTGGATACACGGATGGCCGATATGATCGTATGGGTTGGCCTCTAGTTCTGAAACTGAA 1799
Query 1891 AGATTGGCCTCCAGCTAAAGTCTTCAAAGATAACTTGCCACGTCATGCTGAGGAGTTCTT 1950
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1800 AGATTGGCCTCCAGCTAAAGTCTTCAAAGATAGCTTGCCACGTCATGCTGAGGAGTTCTT 1859
Query 1951 ATGTAGTTTGCCTTTGAAGCATTACACTCATCCGGTTAATGGACCTTTGAATCTCGCTGT 2010
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1860 ATGTAGTTTGCCTTTGAAGCATTACACTCACCCGGTTAATGGACCTTTGAATCTTGCTGT 1919
Query 2011 CAAGCTTCCCCAAAATTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGG 2070
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 CAAGCTTCCCCAAAACTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGG 1979
Query 2071 ATTTGCTCAAGAATTAGGCCGTGGAGATTCTGTTACTAAGCTCCACTGCGACATGTCTGA 2130
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1980 ATTTGCTCAAGAATTTGGCCGTGGAGATTCTGTTACTAAGCTCCATTGCGACATGTCTGA 2039
Query 2131 TGCGG 2135
|||||
Sbjct 2040 TGCGG 2044
Score = 1417 bits (767), Expect = 0.0
Identities = 907/972 (93%), Gaps = 19/972 (2%)
Strand=Plus/Plus
Query 2232 CCAATATGCAACCTGGAAT-TGGAAATCTGAAAAAGAAGCATGCCGAACAAGATCTCAAG 2290
|||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2084 CCAAGATGCAAGATGGAATGGGGAAA-CTGAAAAAGAAGCATGCCGAACAAGATCTCAAG 2142
Query 2291 GAGCTGTATAGCTCAGTAGCTAACAAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGA 2350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2143 GAGCTGTATAGCTCAGTAGCTAACCAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGA 2202
Query 2351 CAACAAGTCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAA 2410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 CAACAAGTCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAA 2262
Query 2411 GATATTCCTAAATTAGAAAGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTAC 2470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 GATATTCCTAAATTAGAAAGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTAC 2322
Query 2471 TGCTGTCCTGTGTCTCAGGTTGTTCATCCTATACATGACCAGAACTTCTATCTGACGCGG 2530
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2323 TGCTGTCCTGTGTCTCAGATTGCTCATCCTATACATGACCAGAATTTCTATCTGACGCGG 2382
Query 2531 TATCATATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAG 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2383 TATCATATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAG 2442
Query 2591 CTTGGTGATGCTGTTTTGATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCC 2650
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CTTGGGGATGCTGTTTTAATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCC 2502
Query 2651 TGCA-ATAAGGTAGCGCT-TGACTTCGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCT 2708
|||| | |||||||| | |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2503 TGCACA-AAGGTAGCT-TGTGACTTTGTCTCACCTGAAAATGTCAGCGAGTGTTTACACT 2560
Query 2709 TGACAAAACAGTATCGTCTACTTCCACCAAATCATTTTGCAAAAGAAGACAAGTTAGGGG 2768
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2561 TGACAAAACAGTATCGTCTACTTCCACCAAATCATTTTGCTAAAGAAGACAAGTTAGCGG 2620
Query 2769 TTAAGAAGATGATAGTCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGT 2828
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2621 TTAAGAAGATGATAATCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGT 2680
Query 2829 CTCCAGAACCTGAAGAGAAGAA-ACAAAATATGAGAGGGCCGAAG-AAGGGGGCAGCCAA 2886
|||||||||| |||||||||| | || || || | | ||| ||| ||||||
Sbjct 2681 CTCCAGAACCCAAAGAGAAGAAGAGAAG-TACGA-ATT-C--AAGGAAGACAACAGCCA- 2734
Query 2887 GG-CAGTTGCCAAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAG 2945
|| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2735 GGACAGTTGTTAAGGCTCTCAAAGACTTACCTCCAAGTGAAAAGAAGTCTTCGGAAGCAG 2794
Query 2946 CTGAAGAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTCAAAGACTTAC 3005
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 2795 CTGAAGAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGCTCCCAAAGACTTCC 2854
Query 3006 CTCCAAGTGAAGAGAAGTCTTCCGAAGCCAAAGTGGAGATATCAAATGGGATAGTCAGTG 3065
||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 2855 CTCCAAGTGAACAGAAGTATTCCGAAGCCGAAGAGGAGATATCAAATGGGATAGTCAATG 2914
Query 3066 CAATGGATAAGGATCTCGAACACATATCTTCAAGCGAAAAGAAGTCTAC-GGAAGAGGAA 3124
|||||||||||| ||||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 2915 CAATGGATAAGGCTCTCGAAAACATATCTTCAAGCGAAAAGAAGTGT-CTGGAAGAGGAA 2973
Query 3125 GGGGTGAAAAGACCAAATATTGTGAGGACATATGAGCGGAGAAAAAAGCTGGGAAGTGAA 3184
||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||
Sbjct 2974 GGGGTGAAAAGACCAAAGATTGTGAGGACATATGAGCGCAGAAAAAAGCAGAGAAGTGA- 3032
Query 3185 GTA-ACCAACGC 3195
| | ||||||||
Sbjct 3033 GAAGACCAACGC 3044
Score = 132 bits (71), Expect = 2e-29
Identities = 110/128 (86%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 2897 AAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAGCTGAAGAGGAG 2956
||||||| ||||||||| ||||||||||| |||||| ||| ||||| | |||||||||
Sbjct 2836 AAGGCTCCCAAAGACTTCCCTCCAAGTGAACAGAAGTATTCCGAAGC--C-GAAGAGGAG 2892
Query 2957 ATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTC-AAAGACTTACCTCCAAGTGA 3015
|||||||||||||||||||||||||| ||||||| |||| ||| || || || |||| ||
Sbjct 2893 ATATCAAATGGGATAGTCAATGCAATGGATAAGGCTCTCGAAA-ACATATCTTCAAGCGA 2951
Query 3016 AGAGAAGT 3023
| ||||||
Sbjct 2952 AAAGAAGT 2959
Score = 102 bits (55), Expect = 2e-20
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1166 GGTAAGCCGGATGATAAGCCGAAGGGTAAGCCAAAGGGTAGGCCAAAGGGTAAGCCGGAT 1225
|||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1111 GGTAGGCCGGATGATAAGCCGAAGGGTAAGCCAAAGGGTAAACTGAAGGGTAAGCAGGAT 1170
Query 1226 GATAAGCCGAAGGGTAAACTGAAGGGTAAGC 1256
||||| ||| | | ||| | |||||||||||
Sbjct 1171 GATAAACCGGATGTTAAGCCGAAGGGTAAGC 1201
> Ahg331156 jgi|Araly1|331156|fgenesh1_pm.C_scaffold_8000499
Length=2754
Score = 887 bits (480), Expect = 0.0
Identities = 692/793 (87%), Gaps = 19/793 (2%)
Strand=Plus/Plus
Query 2239 GCAACCTGGA-ATTGGAAATCTGAAAAAGAAGCATGCCGAACAAGATCTCAAGGAGCTGT 2297
||||||| || |||| ||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1821 GCAACCT-GATATTGAAAAACTGAAAAAGAAGCATGCTGAACAAGATCTCAAGGAGCTCT 1879
Query 2298 ATAGCTCAGTAGCTAACAAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGACAACAAG 2357
|| ||||||||||||||||||||||||||||| |||||||||||| || || ||| |||
Sbjct 1880 ATTTCTCAGTAGCTAACAAGGAGGAAATGATGGGGATTCTTGAAAAGTCTAGCCAAGAAG 1939
Query 2358 TCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGATATTC 2417
|| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1940 TCGAAAATGTTGAGACCGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGACATTC 1999
Query 2418 CTAAATTAGAA-AGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTACTGCTGT 2476
| ||||||||| | |||| || |||||||| |||||||||| |||||| ||||||| ||
Sbjct 2000 CAAAATTAGAACA-TTACCTTCAGAAACATTACAAGGAGTTTAGACATTTCTACTGTTGC 2058
Query 2477 CCTGTGTCTCAGGTTGTTCATCCTATACATGACCAGAAC-TTCTATCTGACGCGGTATCA 2535
||| |||| ||| ||| |||||| ||||||||||| ||| |||||| |||| ||||||||
Sbjct 2059 CCTTTGTCCCAGATTGCTCATCCAATACATGACCA-AACGTTCTATTTGACACGGTATCA 2117
Query 2536 TATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAGCTTGG 2595
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2118 TATAGCGAAGCTGAAAGAAGAATATGGCATTGAACCATGGACCTTTAATCAGAAGCTTGG 2177
Query 2596 TGATGCTGTTTTGATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCCTGCA- 2654
|||||||| || ||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct 2178 GGATGCTGTCTTAATACCTGTAGGGTGCCCACATCAAGTCAGAAATTTGAAGTCTTGCAC 2237
Query 2655 ATAAGGTAGCGCTTGACTTCGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2714
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 A-AAGGTAGCGCTTGACTTTGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2296
Query 2715 AACAGTATCGTCTACTTCCACCAAATCATTTTGCAAAAGAAGACAAGTTAGGGGTTAAGA 2774
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2297 AACAATATCGTCTACTTCCACCAAATCATTTTGCTAAAGAAGACAAGTTAGGGGTAAAGA 2356
Query 2775 AGATGATAGTCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGTCTCCAG 2834
|||||||| | |||||||||||| ||||||| ||||||||||||| || ||||| |||
Sbjct 2357 AGATGATAATTTATGCAGTTGATAGGGCTCTCAAAGACTTAAGTGGAAAGGAGTCTACAG 2416
Query 2835 AACCTGAAGAGAAGAAACAAAATAT-GAGAGGGCCGAAG--AAGGGGGC-AGCCAAGGCA 2890
|||| ||||||| |||| || || || |||| |||| || || | || |||||
Sbjct 2417 AACCCGAAGAGACGAAA-AATTTAAAGAAAGGGAAGAAGTCAAAGGTGATAGTGAAGGCC 2475
Query 2891 GTTGCCAAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAGCTGAA 2950
|| | |||||||||||||||||| |||||||||||||| ||||||||| | | | |
Sbjct 2476 GTCGATAAGGCTCTCAAAGACTTACCTCCAAGTGAAAAG---TCTTCGGAAACCG-T-A- 2529
Query 2951 GAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTCAAAGACTTACCTCCA 3010
||||||| |||||| |||||||||||| |||||||||||| |||| |||||||||| |||
Sbjct 2530 GAGGAGAAATCAAACGGGATAGTCAATCCAATCGATAAGGCTCTCCAAGACTTACCCCCA 2589
Query 3011 AGTGAAGAGAAGT 3023
| |||| ||||||
Sbjct 2590 ACTGAAAAGAAGT 2602
Score = 715 bits (387), Expect = 0.0
Identities = 697/841 (83%), Gaps = 43/841 (5%)
Strand=Plus/Plus
Query 1303 AGACCATATGAAGTACCCTTCTCTGTGGAAAGCAAATGAAGCTGGGATCATTACTTGTTG 1362
||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 969 AGACCATATGAAGGACCCATCTATGTGGAAAGCAAATGAAGCTGGAATCATTACTTGTTA 1028
Query 1363 TTGTGGTGCTGGGGAGTTAGTGCTGAAACGACTACTTCCGGATGGTTGGATATCTGAGTT 1422
||||||||| | | | |||||| ||||||| |||||||||||||||||| ||||||| ||
Sbjct 1029 TTGTGGTGCCGAGAATTTAGTGTTGAAACGCCTACTTCCGGATGGTTGGGTATCTGA-TT 1087
Query 1423 GGT-CAA-CAGAGTTGAAAAAACTGCTGAAGCTGGCGAGCTTTTGAATTTACCTGAAACG 1480
|| || || ||| |||||| |||||||||||||| | |||||| |||| ||||||||
Sbjct 1088 TGTATAAGCA-AGTAGAAAAATCTGCTGAAGCTGGCAAACTTTTGGATTTGTCTGAAACG 1146
Query 1481 GTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACATATTGACATAGACAGCTGTAAT 1540
|||| ||| ||||||||||||| ||| |||||| | ||||| ||||| |||| | ||||
Sbjct 1147 GTTTCGGAACGATGCCCTTGTTTTAAGTCTGACGGTCATATCGACATGGACAACGGTAAA 1206
Query 1541 TTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTTTACTCTCCAAGTG-T 1599
|||| || ||||||||||||||||||||||| ||||||||| | || | |||||||| |
Sbjct 1207 GTGTTCAAGGCTGCTTGTCGAGAAGGTTCAGAGGACAATTATATATATTGTCCAAGTGTT 1266
Query 1600 ATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAAAGGCGAGCC 1659
| | |||||||||||||||||| ||||||||||||| || |||||||| ||||| |||||
Sbjct 1267 A-GAGATGTTCAACAAGATGATCTGAAGCATTTTCAACATCATTGGGTCAAAGGTGAGCC 1325
Query 1660 TGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAT 1719
|||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1326 TGTGGTTATGAGGAATGTGCTTGAGGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAC 1385
Query 1720 GCATCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGGATCACTTA-AGGATGTTG-TT 1777
||||||||||||| | |||| || | |||||| | ||||| || ||||| ||
Sbjct 1386 ATATCGTGCCTGCCGTCTGATACGCAACAAAAAGCATGAAACACTTCTAG-ATGTTAATT 1444
Query 1778 GCTGTTGATTGTTTGGACTTCTGTGAGGTA-AAAGTTAATCTTCATGAATTTTTTACTGG 1836
|| ||||||| ||||||||||||||||| ||| ||| ||||||||||||||| || ||
Sbjct 1445 -CTACTGATTGTCTGGACTTCTGTGAGGTAGAAA-TTACTCTTCATGAATTTTTCACCGG 1502
Query 1837 ATACACGGATGGCCGATATGATCGAATGGGTTGGCCAC-TAGTTCTGAAACTGAAAGATT 1895
||||| || ||| |||||||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 1503 ATACATAGAGGGCAGATATGATCGAATGGGTTGGCCACGT-GTTCTAAAATTGAAAGATT 1561
Query 1896 GGCCTCCAGCTAA-AGTCTTCAAAGATAACTTGCCACGTCATGCTGAGGAGTTCTTATGT 1954
|||||| | |||| ||| | | |||||| | | |||| || || | |
Sbjct 1562 GGCCTC-ATCTAAGAGT-T-CT----TAACTT-CT---T-ATGC--AG---TT-T---G- 1599
Query 1955 AGTTTGCCTTTGAAGCATTACACTCATCCGGTTAATGGACCTTTGAATCTCGCTGTCAAG 2014
||||||||||| |||||||| || |||||||||||||||||| ||||||||
Sbjct 1600 ------CCTTTGAAGCAGTACACTCACCCAACTAATGGACCTTTGAATCTGGCTGTCAAA 1653
Query 2015 CTTCCCCAAAATTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGGATTT 2074
|| || ||||||||| ||||||||||||||| |||||||| ||| |||||| |||||||
Sbjct 1654 CTGCCTAAAAATTGCTCGAAGCCAGACATGGGGCCAAAGACTTACATTGCTTATGGATTT 1713
Query 2075 GCTCAAGAATTAGGCCGTGGAGATTCTGTTACTAAGCTCCACTGCGACATGTCTGATGCG 2134
|| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1714 GCGCAAGAATTTGGCCGCGGAGATTCTGTAACTAAGCTCCATTGCGACATGTCTGATGCG 1773
Query 2135 G 2135
|
Sbjct 1774 G 1774
Score = 508 bits (275), Expect = 8e-143
Identities = 505/611 (83%), Gaps = 35/611 (6%)
Strand=Plus/Plus
Query 535 CAATATGTGCCATCAATGTCAAAAGAGCGAT--A-GG-ATTGTTGAACGGTGTCAGACCT 590
||||||||| |||||||||||| || |||| | || | |||| |||||||||| |
Sbjct 351 CAATATGTGTCATCAATGTCAACGGAACGATAGAGGGCA-AGTTGTGCGGTGTCAGAATT 409
Query 591 GCAATAGTAAGCG-TTATTGTCAT-CCATGCTT-GGACACTTGGTACCCCCTTATAGCAA 647
|||| | ||| | || | | | | |||||||| || |||||||||||| |||||||
Sbjct 410 GCAAGAAAAAGAGATT-TCG-CCTCCCATGCTTAAGA-ACTTGGTACCCCAACATAGCAA 466
Query 648 AAGAAGATGTTGCCAAGAAATG--CATGTTCTGCTCTAGTACTTGCAATTGCAG-AGCAT 704
|||||||| | ||||||||||| |||| ||||| ||| | |||| |||||| || ||
Sbjct 467 AAGAAGATATAGCCAAGAAATGCCCATG--CTGCTGTAGCATTTGCTGTTGCAGAAG-AT 523
Query 705 GCTTGCGTCTAGATACTAAATTGAAAGGGATAAATTCGAACCTCATA-GTCAGCGAGGAA 763
|||||||||||||||||||| | ||||||||||| ||||| ||| | |||||| ||||
Sbjct 524 GCTTGCGTCTAGATACTAAAATAAAAGGGATAAAGTCGAATCTC-GAGGTCAGCAAGGAT 582
Query 764 G-AAAAGGTCCAAGCCTCTAAGTTTA-TTCTGCAGAGCCTTCTCCCACATCTGAAAGG-A 820
| |||| | || |||||| | || || ||| | | |||||||||||| || |||| |
Sbjct 583 GCAAAA-ATTAAATTCTCTAAATATACTT-TGCGGTGGCTTCTCCCACATATG-AAGGAA 639
Query 821 ATAAATGATGAACAAGTTGCTGAGAAGGAAGTTGAGGCCAAA-ATATAC-GGACTGAAGT 878
||||||||||||||| |||||||||||||| |||||| |||| |||| | |||||| |||
Sbjct 640 ATAAATGATGAACAAATTGCTGAGAAGGAACTTGAGG-CAAAGATAT-CTGGACTGGAGT 697
Query 879 TTGAAGAGGTGAGGCCCCAAGACGCTAAAGCTTTCCCTGATGAAAGACTATAC-TGTGAT 937
|||||||||||| ||||||||||||| || || ||| |||||||||||| || ||||||
Sbjct 698 TTGAAGAGGTGAAGCCCCAAGACGCTGAATCTCCCCCCGATGAAAGACTA-ACTTGTGAT 756
Query 938 ATCTGCAAGACTTCTATCTATGATCTCCATAGGAATTGCAAGTCCTGTAGTTTTGATATC 997
|||||||||||||| |||| |||||| ||||||| |||| || |||| || |||||||
Sbjct 757 ATCTGCAAGACTTCGATCTTTGATCTTCATAGGAGTTGCGAGGACTGTTCTTGTGATATC 816
Query 998 TGCCTTAGC-TGTTGCCTTGAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGT 1056
||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 817 TGCCTTA-CTTGTTGCCTTGAGATCCGCAATGGAAAGCCTCAGGCATGTAAGGAGGATGT 875
Query 1057 GTCTTGGAATTATATTAACCGAGGTTTAGAGTATGAACATGGAC-AAGAAGGAAAAGTGA 1115
|||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||| |
Sbjct 876 GTCTTGCAATTATATTAACCGAGGTTTAGAGTATGCACATGGAGGAA-AAGGACAAGTTA 934
Query 1116 TTGAAAAGCCG 1126
|||||| ||||
Sbjct 935 TTGAAATGCCG 945
> Ahg921535 jgi|Araly1|921535|scaffold_102816.1
Length=1801
Score = 268 bits (145), Expect = 1e-70
Identities = 209/241 (87%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1460 CTTTTGAATTTACCTGAAACGGTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACAT 1519
|||||| ||||||||||||||||| |||||||||||||||||| ||||||| | | |||
Sbjct 712 CTTTTGGATTTACCTGAAACGGTTATGGAGCGATGCCCTTGTTTTAACTCTCATGGTCAT 771
Query 1520 ATTGACATAGACAGCTGTAATTTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAAT 1579
||||| | || || | ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 772 ATTGATAAAGCCAACAATAAAAGGTTAAAGGCTGCTTGTCGAGAAGGTTCAGAAGACAAT 831
Query 1580 TATCTTTACTCTCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCAC 1639
||||| || | |||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 832 TATCTATATTGTCCAAGTGTAAGAGATGTTCAAAAAGATGATTTGAAGCATTTTCAGCAT 891
Query 1640 CATTGGGTAAAAGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTA 1699
|| ||||||||||| ||||||||| ||||||| |||| ||| |||| |||| ||||||||
Sbjct 892 CACTGGGTAAAAGGTGAGCCTGTGGTTGTGAGGAATGCGCTCGAAGTTACACCTGGTTTA 951
Query 1700 A 1700
|
Sbjct 952 A 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123268478947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5