BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07620.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903660 jgi|Araly1|903660|Al_scaffold_0003_788 2278 0.0
> Ahg903660 jgi|Araly1|903660|Al_scaffold_0003_788
Length=1413
Score = 2278 bits (1233), Expect = 0.0
Identities = 1354/1414 (96%), Gaps = 2/1414 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGATTACATTCCGAAATACCTGAACGCCTTTCTTTTGGCATTTGCCACTTTTGCT 60
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGATTACATTCCCAAATACCTGAATGCCTTTCTCTTGGCATTTGCCACTTTTGCT 60
Query 61 GTAGGCTTTGCCATTTTCATAGCAAAAGATTCAAATTCATCTTCTCATCTTTATTTTTCA 120
|||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTAGTCTTTGCAATTTTCATAGCAAAAGATTCAAATTCATCTTCTCATCTCTATTTTTCA 120
Query 121 ACATCTTCTTCACTATGGACCTCTTCCTTCTCAC-CCGCCTTCATCACGGTATCCATCTT 179
|||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 121 ACATCTTCTTCACTATGGACCTCTTCCTTCTC-CTCCGCCTTCATCACGGTAACCATCTT 179
Query 180 TCTTACCGTTCATCGATTTAGGGAAAAAAGAAAGAGAAACGGATCAAATCCAGGTTCTGG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTTCCGTTCATCGATTTAGGGAAAAAAGAAAGAGAAACGGATCAAATCCAGGTTCTGG 239
Query 240 ATATTGGAAAAGGGATGGGAAAGTAGAAGCAGAATTAGCAACCGCGAGGGTGTTGATCAG 299
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 240 ATATTGGAAAAGAGATGGGAAAGTAGAAGCAGAATTGGCAACCGCGAGGGCGTTGATCAG 299
Query 300 AGAAGCTCAATTAAATTATAGTTCTACTACATCGTCTCCCCTTGGAGACGAAGACTATGT 359
||||||||||||||| | || ||||||| ||||||||||||| |||||||||||||||||
Sbjct 300 AGAAGCTCAATTAAACTCTAATTCTACTGCATCGTCTCCCCTCGGAGACGAAGACTATGT 359
Query 360 TCCTCATGGCGACATTTACCGGAACCCTTATGCCTTTCACCGAAGTTATCTTCTTATGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTCATGGCGACATTTACCGGAACCCTTATGCCTTTCACCGAAGTTATCTTCTTATGGA 419
Query 420 GAAGATGTTCAAGATATACGTATACGAAGAAGGAGATCCGCCAATATTTCACTATGGACT 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GAGGATGTTCAAGATATACGTATACGAAGAAGGAGATCCGCCAATATTTCACTATGGTCT 479
Query 480 TTGTAAAGACATATACTCCATGGAAGGATTATTCCTAAACTTTATGGAAAACGATGTCCT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 TTGTAAAGACATATACTCCATGGAAGGATTGTTCCTAAACTTTATGGAAAACGATGTCCT 539
Query 540 TAAGTACCGAACCCGAGATCCGGACAAGGCTCATGTCTACTTCTTACCTTTTAGTGTTGT 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAAGTACAGAACCCGAGATCCGGACAAGGCTCATGTCTACTTCTTACCTTTTAGTGTTGT 599
Query 600 GATGATCCTACACCATCTTTTCGACCCAGTTGTTCGAGATAAGGCTGTCTTGGAACGTGT 659
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 600 CATGATCCTACACCATCTTTTCGACCCAGTTGTTCGAGATAAGGCTGTCCTAGAAAGTGT 659
Query 660 CATCGCCGACTATGTCCAAATAATTTCCAAGAAATATCCTTATTGGAACACAAGCGATGG 719
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 CATCGCCGACTATGTCCAGATAATTTCCAAGAAATATCCGTATTGGAACACAAGCGATGG 719
Query 720 GTTTGATCACTTCATGTTGTCTTGCCATGACTGGGGTCACAGGGCAACATGGTACGTAAA 779
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 720 GTTTGATCACTTCATGTTGTCTTGCCATGACTGGGGACACAGGGCAACATGGTATGTAAA 779
Query 780 GAAACTATTTTTCAATTCCATAAGAGTACTATGCAACGCCAACATATCAGAATATTTTAA 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 GAAGCTATTTTTCAATTCCATAAGAGTACTATGCAACGCCAACATATCAGAATATTTCAA 839
Query 840 TCCAGAGAAAGACGCTCCGTTTCCCGAAATTAATTTACTGACCGGAGACATCAACAACTT 899
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 840 TCCAGAGAAAGACGCTCCGTTTCCTGAAATCAATTTACTGACCGGAGAAATCAACAACTT 899
Query 900 AACCGGTGGTTTAGATCCAATCTCTCGTACAACACTTGCTTTCTTCGCTGGAAAATCACA 959
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 900 AACCGGTGGTTTAGATCCAATCTCTCGTAAAACACTTGCTTTCTTCGCTGGGAAATCACA 959
Query 960 CGGCAAAATCCGTCCGGTTCTTCTTAACCACTGGAAAGAAAAGGATAAAGATATTCTGGT 1019
|||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 960 CGGCAAAATCCGTCCGGTTCTTCTAAACCACTGGAAAGAGAAGGACAAAGACATTCTGGT 1019
Query 1020 TTACGAGAATCTACCGGACGGTTTAGATTACACGGAGATGATGAGGAAAAGCCGGTTTTG 1079
|||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||
Sbjct 1020 TTACGAGAATCTACCGGAAGATTTAAATTACACGGAGATGATGAGGAAAACCCGGTTTTG 1079
Query 1080 TATTTGCCCGAGTGGTCACGAAGTTGCCAGTCCGAGAGTACCGGAAGCTATATACAGCGG 1139
|||||||||||| |||||||||||||| || |||||| |||||||||| |||||||||||
Sbjct 1080 TATTTGCCCGAGCGGTCACGAAGTTGCTAGCCCGAGAATACCGGAAGCGATATACAGCGG 1139
Query 1140 ATGTGTACCGGTTCTTATTTCGGAGAACTATGTTTTGCCGTTTAGTGATGTTTTGAACTG 1199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 ATGTGTACCGGTTCTTATCTCGGAGAACTATGTTTTGCCGTTTAGTGATGTTTTGAATTG 1199
Query 1200 GGAGAAGTTCTCGGTTTCGGTATCGGTTAAGGAAATACCGGAACTAAAAAGGATACTGAT 1259
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 GGAGAAGTTTTCGGTTTCGGTATCGGTTAAGGAAATACCGGAACTAAAAAGGATATTGAT 1259
Query 1260 GGATATACCGGAAGAGCGGTATATGAGATTATACGAGGGAGTGAAGAAAGTGAAGAGGCA 1319
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 1260 GGATATACCGGAAGAGCGGTATATGAGACTGTACGAGGGAGTGAAGAAAGTGAAGATGCA 1319
Query 1320 TATTTTGGTTAATGATCCTCCAAAGAGATACGATGTGTTTAATATGATTATACATTCCAT 1379
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 TATATTGGTTAATGATCCCCCAAAGAGATATGATGTGTTTAATATGATTATACATTCCAT 1379
Query 1380 TTGGTTAAGAAGATTAAATGTTAAATTGTTATGA 1413
||||||||||||||||||||||||||||||||||
Sbjct 1380 TTGGTTAAGAAGATTAAATGTTAAATTGTTATGA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5