BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07630.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903661 jgi|Araly1|903661|Al_scaffold_0003_789 1857 0.0
> Ahg903661 jgi|Araly1|903661|Al_scaffold_0003_789
Length=1146
Score = 1857 bits (1005), Expect = 0.0
Identities = 1100/1147 (96%), Gaps = 2/1147 (0%)
Strand=Plus/Plus
Query 13 ATGGCAATGCACACTGTTCGATTGTCGCCGGCGACTCAACTTCACGGCGGTATCTCTAGC 72
||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCAATGAACGCTGTTCGATTGTCGCCGGCGACTCAGCTTCACGGCGGAATCTCTAGC 60
Query 73 AATCTGTCACCACCCAATCGAAAACCTAATAATTCCATCGTCCGATACGGATGCGGATCT 132
|||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 61 AATCTGTCACCATCCAATCGCAAACCTAATAATCCCATCTTCCGATACGGATGCGGATCT 120
Query 133 TCGAAGCGTTTCCGTATCGTAACGGTCTTGGCGTCACTCCGGGAAAACGATGCAAACGGA 192
||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||| ||
Sbjct 121 TCGAACCGTTTCCGTATGGTAACCGTATTGGCGTCACTCCGGGAAAATGATGCAAATGGT 180
Query 193 AGGGATAACTCCGTGAGAGCTATGGAAGTGAAGAAGA-TCTTTGAAGACTCGCCTCTGCT 251
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 181 AGGGATAACTCCGTGAGAGCTATGGAAGTGAAGAAGATTC-TTGAAGACTCGCCTCTGCT 239
Query 252 TCCTAAGCCGTTATCATCGAACCAGCTCACGGAATCTGTCTCTAATGGCTCCCGCGTTCG 311
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 TCCTAAGCCGTTATCATCAAACCAGCTCGCGGAATCTGTCTCTAATGGCTCCCGCGTTCG 299
Query 312 TGTTGCGTATCAGGGAGTACGAGGTGCATACAGCGAATCAGCTGCTGAGAAGGCTTATCC 371
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTGCGTATCAGGGAGTACGTGGTGCATACAGCGAATCAGCTGCTGAGAAGGCTTATCC 359
Query 372 AAACTGTGAAGCTGTTCCATGCGAAGAGTTTGACACTGCTTTTGAGGCGGTTGAGCGGTG 431
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 360 AAACTGTGAAGCTGTTCCATGCGAAGAGTTTGACACTGCCTTTGAGGCCGTTGAGAGGTG 419
Query 432 GCTTGTTGACAGAGCTGTTTTACCGATTGAGAACTCTTTAGGTGGAAGCATCCATAGAAA 491
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GCTTGTTGACCGAGCTGTTTTACCAATTGAGAACTCTTTAGGTGGAAGCATCCATAGAAA 479
Query 492 TTATGATCTTCTGCTGCGACACAATTTGCATATTGTAGGCGAAGTCAAGCTAGCTGTTCG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATGATCTTCTGCTGCGACACAATTTGCATATTGTAGGCGAAGTCAAGCTAGCTGTTCG 539
Query 552 GCACTGTTTGTTGGCTAACCACGGTGTAAATATTGAAGATTTGAGAAGGGTGCTTAGCCA 611
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCACTGTTTGCTGGCTAACCACGGTGTAAATATTGAAGATTTGAGAAGGGTGCTTAGCCA 599
Query 612 TCCACAGGCTCTTGCCCAATGTGAAAACACGTTAACCAAATTGGGGTTGGTCAGAGAAGC 671
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 600 TCCACAGGCTCTTGCCCAATGTGAAAACACGTTAACTAAATTGGGATTGGTCAGAGAAGC 659
Query 672 AGTAGATGATACTGCTGGCGCTGCGAAGCAAATTGCATTCGAAAATTTAAATGATGCAGC 731
||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 660 AGTAGATGACACTGCTGGCGCTGCCAAGCAAATTGCAATCGAAAATTTAAGTGATGCAGC 719
Query 732 TGCAGTTGCCAGTGAAAAAGCTGCAAAGATATATGGTTTGAACATAGTCGCTAAAGATAT 791
||||||||||||| | |||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 720 AGCAGTTGCCAGTGCAGAAGCTGCAGAGATATATGGTTTGAACATAGTTGCTGAAGATAT 779
Query 792 CCAGGATGACTGTGATAATGTTACAAGGTTTCTAATGCTCGCAAGAGAACCCATTATCCC 851
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CCAGGATGACTGTGATAATGTTACAAGGTTTCTAATGCTCGCAAGGGAACCCATTATCCC 839
Query 852 TGGAACTAACAGACTCTTTAAGACAAGTATAGTTTTCTCGTTAGAGGAAGGGCCTGGAGT 911
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TGGAACTAACAGACTCTTTAAGACAAGTATAGTTTTCTCGTTAGAGGAAGGACCTGGAGT 899
Query 912 ACTTTTCAAAGCGCTTGCTGTGTTTGCCCTTCGGCAAATCAACCTCACAAAGATTGAAAG 971
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACTTTTCAAAGCACTTGCTGTGTTTGCCCTTAGGCAAATCAACCTCACAAAGATTGAAAG 959
Query 972 CCGCCCTTTAAGGAAACATCCTCTCCGAGCATCTGGAGGACTAAAATACTTTGACTATCT 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 CCGCCCTTTAAGGAAACATCCTCTCCGAGCATCTGGAGGACTAAAATACTTTGATTATCT 1019
Query 1032 TTTCTATGTGGACTTTGAAGCATCTATGGCTGATGAAGTTGCTCAAAACGCACTTAGGCA 1091
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 TTTCTATGTGGACTTTGAAGCATCTATGGCTGATGAAGTTGCTCAGAACGCACTTAGGCA 1079
Query 1092 TCTCGAGGAGTTTGCTACCTTTTTGCGGGTACTGGGAAGCTACCCAGTGGACACTACAAT 1151
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCTCGAGGAATTTGCTACCTTCTTGCGGGTACTGGGAAGCTACCCAGTGGACACTACAAT 1139
Query 1152 GCTCTAA 1158
|||||||
Sbjct 1140 GCTCTAA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5