BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07640.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478093 jgi|Araly1|478093|fgenesh2_kg.3__794__AT3G07640.1 1131 0.0
> Ahg478093 jgi|Araly1|478093|fgenesh2_kg.3__794__AT3G07640.1
Length=810
Score = 1131 bits (612), Expect = 0.0
Identities = 750/815 (92%), Gaps = 15/815 (2%)
Strand=Plus/Plus
Query 40 ATGAAAGTAGCGGAGAAGATTGTTTTCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 99
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGTAGCGGAGAAGATTGTTATCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 60
Query 100 ATTTCTGATACTTTAAACCCTAGCCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 159
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGCTGATGCTTTAAACCCTAACCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 120
Query 160 CAGCTTCCGTTGGATAAGTATGGCGTTGAAGGTGTGGAAACCGGCGGGAGTATCGTTCAT 219
|| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 121 CACCTTCCGTTGGATAAGTATGGTGTCGAAGGTGCGGAAACCGGCGGGAGTATCGTTCAT 180
Query 220 TTCGTAGATGAAAATGAAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGTTATGAGCCT 279
||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TTCGTCGATGAGAATGGAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGCTATGAGCCT 240
Query 280 CCAGTACTAGTGTGTGCTATGAATGAACTGCTGGACCTAATTACAAGGGGATCGTCAA-C 338
||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 241 CCACTACTAGTGTGTGCTATGAATGAACTGCTGGACCGAATTACAAGGGAAGCGTCAAGC 300
Query 339 TCTACCCACAATCATAGCTCC-TTTCTTTGTGGCGGCATCTAAGCTCAAGTTCAATAACA 397
||||||||||| ||||||| |||| |||||||| |||||||||| |||||||||||||
Sbjct 301 -CTACCCACAATTGTAGCTCCTTTTC-TTGTGGCGTCATCTAAGCTTAAGTTCAATAACA 358
Query 398 GATCCCT-GGAAGCAAATAACAGAAAAGCTAGTCTTCATTACGTTCAAGTTGCTACAGAA 456
||| ||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||
Sbjct 359 GAT-CCTATGAAGCAAATAGCAGAACAGCTAGTCTTCACTACGTTCAAGTTGGGCCAGAA 417
Query 457 ACAGAGACCAGTAGGTTATTTGCTTCTCGCATCGAGAAACCACCACTATCGATGCAGATC 516
||||||| ||||||| |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 418 ACAGAGATCAGTAGGCTATTTGCTTCTCGCATCGAGAAACCACCGCCATTGATGCAGATC 477
Query 517 CATTATGAACCTTTGTCATGCTTGCTTCATCTAGCTCGTGTTAAACGCCTGCCTACCGCT 576
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 478 CATTATGAACCTTTGTCATGCTTGCTCCACCTAGCTCGTGTTAAACGCCTGCCTACCTCT 537
Query 577 ATTCTCATAGGCCAAAGAAGCAATAGCCTAACTCATAAAGCTCTAGA-CGAAGAGCTTCA 635
|||||||| || |||||||| | ||||||| |||||||||||||||| | |||| |||||
Sbjct 538 ATTCTCATTGGGCAAAGAAGTAGTAGCCTATCTCATAAAGCTCTAGATC-AAGACCTTCA 596
Query 636 GGTGATCCATGAAACAGGGGAGC-TCGTGGCTAGTTGGACAGGACTGTCTTTCTCAAGAG 694
|||||| |||||||||||||||| || |||| |||||||| |||||||||||||||||||
Sbjct 597 GGTGATACATGAAACAGGGGAGCTTC-TGGCCAGTTGGACCGGACTGTCTTTCTCAAGAG 655
Query 695 ACAGAATCAAGTGGAGCGCATCAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 754
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACAGAATCAAGTGGAGCGCAAAAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 715
Query 755 TTTATGGCTAATCTTCACAGGTCAGGTC---T-TTTT-CATGGCCCAACACTGCTACAGT 809
||||||| |||||||||||||||||||| | |||| ||||||| ||||||||||||||
Sbjct 716 TTTATGGTTAATCTTCACAGGTCAGGTCAGGTCTTTTTCATGGCCTAACACTGCTACAGT 775
Query 810 CTTTGCTTGGACCTGCAGTAAATTTCCCTATTGTA 844
||||||||||||||||| ||||||||||| |||||
Sbjct 776 CTTTGCTTGGACCTGCACTAAATTTCCCTGTTGTA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5