BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07680.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478100 jgi|Araly1|478100|fgenesh2_kg.3__801__AT3G07680.1 1500 0.0
> Ahg478100 jgi|Araly1|478100|fgenesh2_kg.3__801__AT3G07680.1
Length=1010
Score = 1500 bits (812), Expect = 0.0
Identities = 932/989 (94%), Gaps = 12/989 (1%)
Strand=Plus/Plus
Query 18 GGCTTCTTCGTGTCCGATTCTGAACGAGCTCGCTCTTTCTCATCCAATTCTCTCCACCGT 77
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 24 GGCTTCTTCGTGTCCGATTCTGAACGAGCTCGCTCTTTCTCATCTAATTCTCTCCACCGT 83
Query 78 CTTCTACTCCGATCAATCTTCAAATTTTCTTAACACTCATCGACCAGATCGAGTTTCCAT 137
| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 84 CATCTTCTCCGATCAATCTCCGAATTTTCTTAACACTCATCGACCAGATCGAGTTTCCAT 143
Query 138 CGATCTAATCAATCAATCATCAGATTTGATCTT-CTCAAGAAGATGAGCTTGAAGGGTAC 196
|||||||||| |||| || || ||||| | || | | ||||||||||||||| |||
Sbjct 144 CGATCTAATCTATCATTC-TCTGATTTTAAATTATTGTGGCAGATGAGCTTGAAGGCTAC 202
Query 197 GATCGTATTACTAGGGCTCTTATGGAGCTTCCAGGCTACGTTAGGGATTAGATTCGTGAT 256
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 203 GATCGTATTGTTAGGGCTCTTATGGAGCTTCCAGGCTACGTTAGGGATTAGATTCGTAAT 262
Query 257 AGACCGTGAAGAATGTTTCTCCCACAAGGCTGAATATGAAGGTGATACGCTTCATGTCTC 316
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 263 AGACCGAGAAGAATGTTTCTCCCACAAGGCTGAATATGAAGGCGATACGCTTCATGTCTC 322
Query 317 TTTCGTCGTCATCAAGTCTGACTCTCAATGGCATTTTAACGAGGATGGTGTAGATCTTGT 376
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 323 TTTCGTCGTCATCAAGTCTGACTCTCAATGGCACTTTAACGAGGATGGTGTAGATCTTGT 382
Query 377 GATACATGGCCCAACAGGCGAACAAATTCATGACTTCAGGGAGCAGATAAGCGCAAAGCA 436
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 383 GATACATGGCCCAACAGGCGAACAAATTCATGACTTCAGGGAACAGATAAGCGCAAAGCA 442
Query 437 TGATTTTGTTGTCCaaaaaaaaGGGGTTTACAGATTCTGTTTCACAAACAAGTCTCCTTA 496
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 443 TGATTTTGTTGTCCAAAAGAAAGGGGTTTACCGATTCTGTTTCACAAACAAGTCTCCTTA 502
Query 497 TCATGAAACCATTGACTTCGATGTACAGCTTGGTCACTTTGCATACTACGATCAACACGC 556
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 503 TCACGAAACCATCGACTTCGATGTACAGCTTGGTCACTTTGCATATTACGATCAACATGC 562
Query 557 AAAGGACGAGCATTTCACTCCCTTGATGGAGCAAATATCAAAGTTAGAGGAGGCTCTTTA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAAGGACGAGCATTTCACTCCCTTGATGGAGCAAATATCAAAGTTAGAGGAGGCTCTTTA 622
Query 617 CAACATCCAATTTGAACAACATTGGTTAGAAGCTCAGACCGATCGTCAAGCTATCGTGAA 676
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 623 CAACATCCAATTTGAACAACATTGGTTAGAGGCTCAGACTGATCGTCAAGCCATCGTGAA 682
Query 677 CGAGAACATGAGCAAAAGAGCAGTACACAAAGCTTTGTTCGAGTCGTTTGCACTGATTGG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CGAGAACATGAGCAAAAGAGCAGTACACAAAGCTTTGTTCGAGTCGTTTGCACTGATTGG 742
Query 737 GGCAAGTTTTCTCCAAGTTTATCTTCTGCGTCGCTTGTTTGAACGCAAACTCGGCATGTC 796
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGCAAGTCTTCTCCAAGTGTATCTTCTGCGTCGCTTGTTTGAACGCAAACTCGGCATGTC 802
Query 797 TCGTGTCTAAAAGTATCGAGTTT-ATTATGACTTTGAA-CTTATTTTGCCTTAAAATGTA 854
|||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 803 TCGTGTCTAAAAGTATTGAGTTTTATTATGACTTTGAAACTTATTTTGCCTTAAAATGTA 862
Query 855 CCAGGGAA-----TCTTTACTTAAAACCTTTTTACAGACAGATCGTAGTTCATTGGAAGA 909
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 863 CCAGGGAAAGGAATATTTACTTAAAATCTTTTTACAGACAGATCGTAGTTCATTGGAAGA 922
Query 910 TTTGCTTTCTCCCATGTTCAAGAACTAATCCTCTCGTGATGATAATTCttttttttCTCT 969
|||||||||||||||||||||||| | |||| |||||||| |||||| |||||| | | |
Sbjct 923 TTTGCTTTCTCCCATGTTCAAGAAATTATCCACTCGTGATTATAATT-TTTTTTCT-T-T 979
Query 970 TTATTAACAGACAACTTTTCCACAAGCTA 998
||||||||| |||||||||||| ||||||
Sbjct 980 TTATTAACAAACAACTTTTCCATAAGCTA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5