BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07690.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903668 jgi|Araly1|903668|Al_scaffold_0003_796 1426 0.0
> Ahg903668 jgi|Araly1|903668|Al_scaffold_0003_796
Length=1380
Score = 1426 bits (772), Expect = 0.0
Identities = 819/842 (97%), Gaps = 2/842 (0%)
Strand=Plus/Plus
Query 140 GTGGAGACGAATTCAGTTCCGAGCAGATTGGTGGAAGAAAGGCTTGATGAGATTCGTAGA 199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 GTGGAGACGAATTCAGCTCCGAGCAGATTGGTGGAAGAAAGGCTTGATGAGATTCGTAGA 84
Query 200 GTAATGGGTAAAGCTGATGACGACCCGTTAAGGATCGTTGGTGTAGGAGCTGGTGCTTGG 259
|||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 85 GTAATGGGCAAAGCTGATGATGATCCATTAAGGATCGTTGGTGTAGGAGCTGGTGCTTGG 144
Query 260 GGAAGCGTTTTCATTGCAATGTTGCAGGAAAATTACGGTAAGTTTAGGGGCAAAGTTAGT 319
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 145 GGAAGCGTTTTCATTGCAATGTTGCAGGAAAACTACGGCAAGTTTAGGGCCAAAGTTAGT 204
Query 320 GTGAGAATCTGGAGAAGAGGAGGCAGAGCAATCGAT-AAAGCCACAGCTGAACATTTGTT 378
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 205 GTGAGAATCTGGAGAAGAGGAGGCAGAGCAATCGATAAAAG-CACAGCTGAACATTTGTT 263
Query 379 CGAAGTGATTAATTCGAGGGAAGAATTGTTGAGGAGGTTGATAAGAAGGTGTGCTTATCT 438
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 264 CGAAGTCATTAATTCGAGGGAAGAATTGTTGAGGAGGTTGATAAGACGGTGTGCTTATCT 323
Query 439 CAAGTATGTGGAAGCTAGATTAGGGGATAGGGTTTTATATGCTGATGAGATATTGAAAGA 498
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 324 CAAGTATGTGGAAGCTAGATTAGGGGATAGGGTTTTATACGCGGATGAGATATTGAAAGA 383
Query 499 TGGGTTTTGCTTGAATATGATTGAGACTCCTTTGTGTCCTTTGAAAGTTGTGACTAATCT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGGGTTTTGCTTGAATATGATTGAGACTCCTTTGTGTCCTTTGAAAGTTGTGACTAATCT 443
Query 559 TCAAGAAGCTGTTTGGGATGCTGATATTGTCATCAATGGTTTACCATCAACTGAGACGTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 444 TCAAGAAGCTGTTTGGGATGCTGATATTGTCATCAATGGTTTACCATCAACTGAGACATT 503
Query 619 TCAGGTGTTCAATGAGATTAGTAAGTATTGGAAAGAGAGGGTTAATGCTCCTGTTATTAT 678
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 504 TCAGGTGTTCAATGAGATTAGTAAGTACTGGAAAGAGAGGGTTAATGCTCCTGTTATTAT 563
Query 679 CTCTTTGGCTAAAGGTGTGGAAGCAGAGTTTGAGCCTCATCCTCGGATTGTTACTCCTAC 738
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 564 CTCTTTGGCTAAAGGTGTGGAAGCAGAGTTTGAGCCTCATCCTCGTATTGTTACTCCTAC 623
Query 739 GCAAATGATCCATCGAGCGACTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACC 798
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GCAAATGATCTATCGAGCGACTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACC 683
Query 799 TAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA 858
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 684 TAATATTGCTTCAGAGGTATACAACAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA 743
Query 859 AAAATGGAGGAAGCCTTTGGGAAAGTTTCTAAGGCAGTCTCATTTCATAGTCTGGGATAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 744 AAAATGGAGGAAGCCTTTGGGAAAGTTTCTAAGGCAGTCTCATTTCATAGTGTGGGATAA 803
Query 919 TAGTGACCTCATTACTCATGAAGTAATGGGTGGCTTGAAGAATGTTTATGCCATTGGTGC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 CAGTGACCTCATTACTCATGAAGTAATGGGTGGCTTGAAGAATGTTTATGCCATCGGTGC 863
Query 979 AG 980
||
Sbjct 864 AG 865
Score = 896 bits (485), Expect = 0.0
Identities = 507/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 1008 CAGGAATGGTGGCTACACTGACTAAGGAAAGTGCTACCAGCAAATCAGTGTACTTTGCGC 1067
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 863 CAGGAATGGTGGCTACACTGACTAAGGAAAGTGCTACCAGCAAATCAGTATACTTTGCGC 922
Query 1068 ATTGTACTTCAGAGATGATTTTTATTACTCATTTATTGGCCAAGGAGCCAGAGAAACTCG 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 923 ATTGTACTTCAGAGATGATTTTTATTACTCATTTATTGGCCAAGGAGCCAGAGAAACTTG 982
Query 1128 CTGGGCCTTTGCTTGCGGATACCTATGTAACATTACTGAAAGGTCGTAATGCGTGGTACG 1187
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 983 CAGGGCCTTTGCTCGCGGATACCTATGTAACATTACTAAAAGGTCGTAATGCGTGGTATG 1042
Query 1188 GCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGG 1102
Query 1248 GAATGATTCAGGGGGTTTCTGCGGTGAAAGCATTTTTCGAGTTGTTGAACCAATCCTCGT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GAATGATTCAGGGGGTTTCTGCGGTGAAAGCATTTTTCGAGTTGTTGAACCAATCCTCGT 1162
Query 1308 TAAGTCTTCAACACCCTGAAGAGGGCAAGCCTGTAACTCCGGCTGAACTTTGTCCCATCT 1367
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1163 TAAGTCTTCAACACCCTGAAGAGGGCAGGCCTGTAACTCCGGCTGAACTCTGTCCCATCT 1222
Query 1368 TAAAGATGCTCTACAGAATTCTTATAACAAGAGAGTTCTCGTGTGAGGCGATTCTTGAGG 1427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1223 TAAAGATGCTCTACAGAATTCTTATAACAAGAGAGTTCTCGTGTGAGGCGATTCTTGATG 1282
Query 1428 CGCTGAGAGATGAAACGATGAATGACCCACGTGAACTCATCGAGATTGCTCACAGCCATC 1487
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 CGCTGAGAGACGAGACGATGAATGACCCACGTGAACTCATCGAGATTGCTCACAGCCATC 1342
Query 1488 TCTTCTTCCAGCCATGGCTTCTTGGTCAGAAACCTTGA 1525
||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TCTTCTTCCAGCCATGGCTTCTTGGTCAGAAACCTTGA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5