BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07710.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928455 jgi|Araly1|928455|scaffold_300912.1                        592    9e-169


> Ahg928455 jgi|Araly1|928455|scaffold_300912.1
Length=761

 Score =  592 bits (320),  Expect = 9e-169
 Identities = 395/431 (92%), Gaps = 5/431 (1%)
 Strand=Plus/Plus

Query  4    GAGAATGAGACTGGTGGGAAGGATAGGGAGGTAGTTGAAGCAGTGACAAACAGTGAACCT  63
            |||| || ||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct  333  GAGATTGGGACTGGTGGGAAGGAGAGTGAGGTAGTTGAAGCAGTGACAAACGGTGAACCT  392

Query  64   GGAAATGGTGATGGATTTGCaaaaaaaGGCGACTCTTATGATGACAAATTACCTTCTGAA  123
            || |||  |||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  393  GGGAATCATGATGGATCTGCAAAAAAAGGCGACTCTTGTGACGACAAATTACCTTCTGAA  452

Query  124  AATGTTGACAAACATATGGAGAATGAGGCTAATGAGAAGGAGAAG-GAGGAAGATGGTGC  182
            || ||||||||||||||||||||||||| ||||| ||||||| || |||||||||| |||
Sbjct  453  AACGTTGACAAACATATGGAGAATGAGGATAATGGGAAGGAG-AGTGAGGAAGATGATGC  511

Query  183  TGCTGATGAGCTGTGCGCTTTACAGGATGCGCTTGAGACGACACTGTTTCAGCATTTAAG  242
            |||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||| |
Sbjct  512  TGCTGATGAGCTGTGCGCGTTACAGGACGCGCTTGAGAGGACACTGTTTCAACATTTAGG  571

Query  243  CAACTATGCACAGAAGCAGATG-TTACAGAAGTTGAGGAGCCTTAGAGCCAAGGAAAGGA  301
             || ||||||||||||||| || ||  |||||||||||||||||||||||||||||||||
Sbjct  572  TAAGTATGCACAGAAGCAGGTGCTT-GAGAAGTTGAGGAGCCTTAGAGCCAAGGAAAGGA  630

Query  302  AAGAGTTGAGCGGTGAATGGAAGTCATTACTTGCTCAGGAGGCGCTACTGAAGAGCAAGA  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  631  AAGAGTTGAGCGGTGAATGGAAGTCATTACTTGCTCAGGAGGCGCTACTGAAGAGCAAGA  690

Query  362  AATATTCGTTTTCAGCCGAACTCGCAAATGCAACATTTCATACTTGGGAAGAAGAAACTA  421
            || |||||||||| ||| |||||||||||||||||||||||| || || |||||||||||
Sbjct  691  AACATTCGTTTTCCGCCAAACTCGCAAATGCAACATTTCATAATTAGGTAGAAGAAACTA  750

Query  422  GACG-AATGGT  431
            || | ||||||
Sbjct  751  GAGGGAATGGT  761



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5