BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07720.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928456 jgi|Araly1|928456|scaffold_300913.1 1578 0.0
> Ahg928456 jgi|Araly1|928456|scaffold_300913.1
Length=1044
Score = 1578 bits (854), Expect = 0.0
Identities = 981/1043 (94%), Gaps = 5/1043 (0%)
Strand=Plus/Plus
Query 54 GTAATTTGCAGCAGAGCAACGATGGCAGCGACTCCAATGGAAGGCAAATGGGTTCAGCTT 113
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 GTAA-TTGCAGCAGAGCAACGATGGCAGCGACTCCAATGGAAGGCAAATGGATTCAGCTT 61
Query 114 AAACAGAAAGGAACCGGACCAGGAGCAAGAAGCTCTCATGCTATAGCTCTTGTGGGAAAC 173
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 62 AAACAGAAAGGAACCGGACCAGGAGCAAGAAGCTCTCATGCCATAGCTCTTGTGGGAAAC 121
Query 174 AAAATGTATGCCTTTGGTGGCGAGTTTCAACCACGTGTTCCTGTTGACAACCAGCTCTAC 233
||||||||||||||||| || ||||| ||||| |||||||| ||||||||| | ||||||
Sbjct 122 AAAATGTATGCCTTTGGCGGTGAGTTCCAACCGCGTGTTCCCGTTGACAACAATCTCTAC 181
Query 234 GTTTTCGACCTCGAAACTCAGACATGGTCTATCCAGGAAGCTTCTGGGGATGCTCCTCCT 293
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 GTTTTCGACCTCGAGACTGAGACATGGTCGATCCAGGAAGCTTCTGGGGATGCTCCTCCT 241
Query 294 CCTAGAGTAGGTGTAGCCATGGCTGCAGTCGGACCCATCATCTATTTCTTTGGTGGCCGG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCTAGAGTAGGTGTAGCCATGGCTGCAGTCGGACCCATCATCTATTTCTTTGGTGGCCGG 301
Query 354 GACTCGACTCACCAGGAGCTCAACGAGTTATACTGTTTTAACACTTTGACCAACCAGTGG 413
|| |||||||||||||||||||||||| | |||||||| ||||| | |||||||||||||
Sbjct 302 GATTCGACTCACCAGGAGCTCAACGAGCTCTACTGTTTCAACACGTCGACCAACCAGTGG 361
Query 414 AAACTACTCTCTTCAGGGGAAACCGGTCCACAGAACCGAAGCTACCACTCTATTACTGCG 473
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 362 AAACTACTCTCTTCAGGGGAAACCGGTCCACAAAACCGAAGCTACCACTCGATCACTGCG 421
Query 474 GATTCTCAGAACGTGTATGTGTTTGGTGGATGCGGAGTTGATGGGCGTCTCAACGATCTA 533
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 422 GATTCTCAGAACGTGTATGTGTTTGGTGGATGCGGAGTTGAAGGGCGTCTTAACGACCTA 481
Query 534 TGGGCTTACAATGTCGTTGATCAGAAATGGATTAAGTTCCCATCTCCGGGAGAAGCTTGT 593
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 482 TGGGCTTACAATGTTGTTGATCAGAAATGGATTAAGTTCCCGTCTCCGGGAGAAGCCTGT 541
Query 594 AGAGGAAGAGGCGGTCCAGGACTCGAGGTGGTTCAAGGAAAGATCTGGGTGGTATATGGA 653
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 542 AGAGGAAGAGGTGGTCCAGGGCTAGAGGTGGTTCAAGGAAAGATCTGGGTGGTATATGGA 601
Query 654 TTCGCAGGAGAAGAAGCAGACGATGTCCAC-TGTTTCGACATAGCTAAAGGGGAATGGAA 712
||||||||||||| ||| || ||||| ||| | ||| |||||||||| ||| ||||||||
Sbjct 602 TTCGCAGGAGAAGGAGCGGATGATGTTCACGTTTTT-GACATAGCTACAGGAGAATGGAA 660
Query 713 AGAAGTTGAGACAAAAGGCGAAAAACCGTCAGCAAGAAGTGTGTTTTCGACTGCGGTTGT 772
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 661 TGAAGTTGAGACAAAAGGCGAAAAACCGTCAGCAAGAAGTGTGTTTTCAACTGCAGTTGT 720
Query 773 TGGGAAACAGATACTGATATCTGGAGGAGAGATTGACCCGAGCGATCTGGGGCATATGGG 832
||||||||||||||||||||||||||| || || || || |||||| |||||||||||||
Sbjct 721 TGGGAAACAGATACTGATATCTGGAGGGGAAATCGATCCTAGCGATTTGGGGCATATGGG 780
Query 833 AGCAGGATGTTTCACAGGTGACGCTTATGGGCTTGATACAGAGACGCTGGAATGGAGGAA 892
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 781 AGCAGGATGTTTCACAGGTGACGCGTATGGGCTTGATACAGAGACGTTGGAATGGAGGAA 840
Query 893 ATGGGAGGATGGGGTTGGATCGGTGGAGCATCCCGGTCCTAGAGGATGGTGCGCGTTTGC 952
||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct 841 ATGGGAGGATGGGGTTGGATCAGAGGAGCATCCGGGGCCTAGAGGATGGTGCGCGTTTGC 900
Query 953 AGCTGGATCACGAGATGGTAAGCAAGGTCTGTTGGTTTATGGCGGGAACTCGCCGAGCAA 1012
||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 901 GGCTGGATCACGAGATGGTAAGCAAGGTTTGTTGGTTTACGGCGGGAACTCACCGAGCAA 960
Query 1013 TGATAGGCTTGATGATATCTTCTTCTTCACTCCCAACACTCTACTCAAGTGATTGGTAAC 1072
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 961 TGATAGGCTTGATGATATCTTCTTCTTCACTCCCAGCACT--ACTCAAGTGATTGGTAAC 1018
Query 1073 TAAGTATGGTTTGGTTTTCTTGC 1095
|||||||||||||||||||||||
Sbjct 1019 TAAGTATGGTTTGGTTTTCTTGC 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5