BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07730.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903672 jgi|Araly1|903672|Al_scaffold_0003_800 1927 0.0
> Ahg903672 jgi|Araly1|903672|Al_scaffold_0003_800
Length=1434
Score = 1927 bits (1043), Expect = 0.0
Identities = 1319/1447 (91%), Gaps = 40/1447 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAAGAAAGCCATTGTGATTGATGATGGATATACAAGGTTTATG-GTGAAT-G--A 56
|||||||||||||||||||||||||| |||||||||| |||||||||| | | | |
Sbjct 1 ATGAAGAAGAAAGCCATTGTGATTGACGATGGATATAGAAGGTTTATGCAT-ACTCGTCC 59
Query 57 AATGTCTGAAAAAATCGATGTTCCAATTATCTGTCTTGACGAAgatgatgatgatgatga 116
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 60 AATGTCTGAGAAAATCGATGTTCCAATTATCTGTCTTGACGAAGATGAT-A--ATGATGA 116
Query 117 tCTTATGGTTGATAAGGAGTACAACGTCTTCTTGGATCATCTTCGAAGAGGTGATAAGAA 176
||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 117 TCTTATGATTGATAAGGACTACAACGTGTTCTTGGATCATCTTCGAAGAGGTGATATTAA 176
Query 177 AAGTTCAAGC-ACTCGCCTTGAAGTTGACAATGGAGCATCTGACATTCGTAGATTAAAGA 235
|||| || | |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 177 CAGTTTAA-CTCCTCGCCTTGAGGTTGACAATGGAGAATCTGACATTCGTAGATTAAAGA 235
Query 236 TCTTTTCTTGTGATTCAAAGAGATCTAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAG 295
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 236 TCTTTTCTTGTGATTCAAAGAGACCAAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAG 295
Query 296 TTAATCAACAGAGCAAGAGGAAAACTGTTGGAG-TTGAGGTTGAAAGAGTTAAAATCCGA 354
|| |||||||| ||||||||| ||||||||| | || ||| |||||||||||| ||||||
Sbjct 296 TTCATCAACAGGGCAAGAGGAGAACTGTTGG-GTTTAAGGCTGAAAGAGTTAATATCCGA 354
Query 355 GAAATCATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGGATCGCAGAGTTA 414
|||| ||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 355 GAAAACATTCAACGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGAATTGCTGAGTTA 414
Query 415 GAAGCTGCAAAGACTTCAAGAGACGTTCCTTCACTCGAAA-CCCAACAAGAAGACATTCA 473
||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||
Sbjct 415 GAAGCTGCAAAGACTTCAAGAGATGTTCCTTCACTC-AAATCCCAACAAGAAGACACTCA 473
Query 474 ACAACGAGACAACAAAGTTAGGAAACTTTCCGAGTCAAAGGCTGAGACTTTAAGAAGAGA 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 474 ACAACGAGACAACAAAGTTAGGAAACTTTCAGAGTCAAAGGCTGAGACTTTAAGAAGAGA 533
Query 534 TGATGTTCCATTGGTTAAAACTCAAGAAGACATTCAAAGAGACAACAGAGTTGCTGAACG 593
|||||||||||||||| |||||||||||||| |||| ||||| ||| |||| || || |
Sbjct 534 TGATGTTCCATTGGTTGGAACTCAAGAAGACAGTCAACGAGACCACACAGTTTCTCAAGG 593
Query 594 AAGAAAGAGGAAAT-GTGACGATGCTTTAATAAAAGATGTTCCATTGGTTAG-AACTGAA 651
||||||||| ||| |||||||||||||| || |||||||||||||||| | ||||| |
Sbjct 594 GAGAAAGAGG-AATAATGACGATGCTTTAAGAAGAGATGTTCCATTGGTT-GAAACTGGA 651
Query 652 GAAG--A--CAAGAGGGTTGCTGTGGAGATTGATCACGTAGAGCGAGTACATAGAGTTAC 707
|||| | ||| || || | ||| || |||||| ||| ||||| ||||||||||
Sbjct 652 GAAGATATTCAACAGACTT-C---AGAGGCTGTTCACGTGGAGGGAGTAAATAGAGTTAC 707
Query 708 AGAGGTTAATGATGTAGATGAGACTTCTTCAAGGAGCAAAGAAGTTTTTGTAGGGAGAAG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 708 AGAGGTTAATGATGTAGATGAGACTTCTTCAAGGAGCAAAGAAGTTTTTGTAGGGCGAAA 767
Query 768 GAAGAAGAATGA-G--GGGAGTGAAGCGGTTGTGGATAAGGATTACATGAGGTACCTCAC 824
||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 GAATAAGAATGAGGATGGGAGTGAAGCGGTTGTGGATAAGGATTACATGATGTACCTCAC 827
Query 825 ATGGCTTGTAGATTCTCTTAGCGA---TTCGACAACTGAGCCAATGGAAAATCTTCAGAA 881
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 828 ATGGCTTGTAGATTCTCTTAGAGATTCTTCGACAACTGAGCCAATGGAAAATCTTCAGAA 887
Query 882 AG---A---TGATATGGATACTCTAAAAGAATCGACAATGGTACCTGAATTGGATCCACT 935
|| | |||| |||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 888 AGATCAGTCTGATTTGGATACTCTAAAAGAATCGACAATGGTCCCTGAAATGGATCCACT 947
Query 936 AGTAGAAGTGAAGGTTGAACCACATGATGATTGGTCTGATTATATAATTGCGATGGGTGA 995
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 948 AGTAGAAGTGAAGGTTGAACCAGATCATGATTGGTCTGATTATATAATTGCCATGGGTGA 1007
Query 996 TTCCCCTTTTTTGGATGGAGAGGAGTGTACACCGTTTGTGGCGTCCAAGAAAGTGGTTGA 1055
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 TTCACCGTTTTTGGATGGAGAGGAGTGTACACCGTTTGTGGTGTCCAAGAAAGTGGTTGA 1067
Query 1056 TCTTGATGAAGGAAGCAAAGAGAATGAAAGTAGTAGCAGTTGGTTTAGAAAGGAGCTAAT 1115
||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1068 TCTAGATGAAGGAAGTAAAGAGGATGAAAGTAGTAGTAGTTGGTTTAGAAAGGAGCTAAT 1127
Query 1116 GGATGTTTTG-AAAAATCCATATGATGAAGGAGAGATGAAGCAGCTCCATCGTTACGTAT 1174
||||||| || ||||| |||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 1128 GGATGTTCTGCAAAAA-CCATATGATGAAGGAGAGTTGAAGCTGCTCCATCGTTACGCAT 1186
Query 1175 CAATCCATaaaaaaaTGACTCGATGCAGAGAACTACGAAAGGGAAGAGGATCTGATTATG 1234
||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1187 CAATCCATAGAAAAATGACTCGATGCAGAGAACTACGAAAGGGGAGAGAATCTGATTATG 1246
Query 1235 AGACTGACGAACTGGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACA 1294
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AGACTGACGAACTTGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACA 1306
Query 1295 AGCTTGTGGTTGGTGTTGATAAGGCAAGAGCTTTGAAGTTGCTGCGTGGCTTTTTCTTTT 1354
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1307 AGCTTGTGGTTGGTGTTGATAAGGCAAGAGCATTGAAGTTGCTGCGTGGGTTTTTCTTGT 1366
Query 1355 ACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAAGACTCAAAGTTGGC 1414
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1367 ACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAGGAATCAAAGGTGGC 1426
Query 1415 AACCTTA 1421
|||||||
Sbjct 1427 AACCTTA 1433
Score = 71.3 bits (38), Expect = 2e-11
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 558 AGAAGACATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGAGGA-AAT 607
|||| |||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 354 AGAAAACATTCAACGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGAAT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5