BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07740.4
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478110 jgi|Araly1|478110|fgenesh2_kg.3__811__AT3G07740.1 2656 0.0
> Ahg478110 jgi|Araly1|478110|fgenesh2_kg.3__811__AT3G07740.1
Length=1821
Score = 2656 bits (1438), Expect = 0.0
Identities = 1733/1868 (93%), Gaps = 49/1868 (3%)
Strand=Plus/Plus
Query 15 AAGTGCGAGCTTGGTGCCGATGGGTCGTTCGAAACTAGCTTCTCGTCCTGCTGAGGAAGA 74
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAGTGCGAGCTTGGTGCCGATGGGTCGTTCGAAATTAGCTTCTCGTCCTGCTGAGGAAGA 60
Query 75 CCTGAATCCAGGAAAATCAAAAAGGAAAAAGATATCATT-GGGTCCTGAGAATGCTGCGG 133
|||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| | ||
Sbjct 61 CCTGAATCAAGGAAAATCGAAAAGGAAAAAGATATC-TTCGGGTCCTGAGAATGCAGGGG 119
Query 134 CATCAATTTCCACCGGAATTGAAGCTGGGAATGAGAGGAAACCTGGCCTTTACTGTTGTA 193
| ||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 120 CTTCAGTTTCCACCGGAAGTGAAGCTGGGAATGAGAGGAAAGCTGGCTTTTACTGTTGTA 179
Query 194 ACTATTGCGATAAAGATCTGTCTGGTTTGGTTCGTTTCAAATGTGCTGTTTGTATGGACT 253
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACTATTGCGACAAAGATCTGTCTGGTTTGGTTCGTTTTAAATGTGCTGTTTGTATGGACT 239
Query 254 TTGATCTTTGTGTGGAATGCTTTTCTGTCGGCGTTGAACTTAATCGTCACAAGAACAGTC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGATCTTTGTGTGGAATGCTTTTCTGTCGGCGTTGAACTTAATCGTCACAAGAACAGTC 299
Query 314 ACCCATATCGTGTTATGGTTAGTTTCCAACGCCGAGCAGACAATTTGTCTTTTTCGCTTG 373
||||||||| | ||||| | | ||||||||||||||| | ||||
Sbjct 300 ACCCATATC--G----GGTTA---T----------G--GACAATTTGTCTTTTCCTCTTG 338
Query 374 TTACTTCTGATTGGAATGCCGATGAAGAGATACTCCTTCTTGAGGCCATTGCGACATACG 433
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 339 TTACTTCTGATTGGAACGCCGATGAAGAGATACTCCTTCTTGAGGCCATTGCCACATACG 398
Query 434 GGTTTGGCAATTGGAAAGAAGTTGCAGACCATGTTGGTAGTAAGACAACGACAGAATGTA 493
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 399 GGTTTGGCAATTGGAAAGAAGTTGCAGACCATGTTGGCAGTAAGACAAATACAGAATGTA 458
Query 494 TTAAACACTTCAATTCTGCTTACATGCAGTCACCATGCTTTCCACTTCCGGACTTGTCCC 553
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TTGATCACTTCAATTCTGCTTACATGCAGTCACCATGCTTTCCACTTCCGGACTTGTCCC 518
Query 554 ATACTATTGGAAAGAGCAAAGATGAGCTGCTTGCTATGAGTAAAGATAGTGCAGTCAAAA 613
|||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 519 ATACAATTGGAAAGAGCAAAGAGGAGCTGCTTGCTATGAGTAAAGAGATTGCAGTCAAAA 578
Query 614 CAGAAATACCTGCATTTGTGAGGCTATCTCCAAAAGAAGAGTTACCTGTGTCAGCTGAAA 673
||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 579 CAGAATTACCTGCACTTGTGAGGCTATCTCCAAAAGAAGAGTTGCCTATGTCAGCTGAAA 638
Query 674 TCAAACACGAAGCTTCAGGGAAGGTCAATGAAATAGATCCACCTTTGTCTGCCTTAGCTG 733
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 639 TCAAACACGAAGCTTCAGGGAAGGACAATGCAATAGATCCACCTTTGCCTGCCTTAGCTG 698
Query 734 GAGTCAAGAAGAAAGGCAATGTACCGCAGGCTAAGGACATCATCAAGTTGGAAGCTGCAA 793
||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 699 GAGTCAAGAAGAAAGTCAATGTACCGCAGGCTAAGG--A-CATCAAGTTGGAAGCTGCAA 755
Query 794 AACAACAATCTGACAGGAGTGTCGGGGAGAAGAAACTCAGACTTCCTGGAGAGAAAGTTC 853
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 756 AACAACAATCTGACAGGAGTGTCGGGGAGAAGAAACTTAGACTTCCTGGAGAGAAAGTTC 815
Query 854 CATTAGTAACAGAGTTATATGGTTACAATCTAAAGAGGGAAGAATTTGAGATCGAACATG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CATTAGTAACAGAGTTATATGGTTACAATCTAAAGAGGGAAGAATTTGAGATCGAACATG 875
Query 914 ACAACGATGCTGAGCAACTGCTTGCTGACATGGAATTTAAGGATTCTGACACAGATGCTG 973
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 876 ACAACGATGCTGAGCAACTGCTCGCAGACATGGAATTTAAGGATTCTGACACGGATGCTG 935
Query 974 AGCGTGAGCAGAAACTGCAGGTTCTTCGTATTTACTCGAAAAGGCTTGATGAGAGGAAGC 1033
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 936 AGCGTGAGCAGAAGCTGCAGGTTCTTCATATTTACTCGAAAAGGCTAGATGAGAGGAAGC 995
Query 1034 GGAGGAAGGAATTTGTTCTGGAAAGAAACTTGTTGTACCCTGATCAATATGAGATGAGCC 1093
||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 996 GGAGGAAGGAATTCGTTCTAGAAAGAAACTTGCTGTACCCTGATCAATATGAGATGAGCC 1055
Query 1094 TTTCAGCAGAGGAGAGAAAAATATATAAAAGCTGTAAAGTGTTTGCGCGGTTCCAATCCA 1153
|||| ||||||||||||||| ||||||| || |||||||| |||||||||||||| ||||
Sbjct 1056 TTTCCGCAGAGGAGAGAAAATTATATAAGAGTTGTAAAGTCTTTGCGCGGTTCCACTCCA 1115
Query 1154 AAGAAGAGCACAAGGAACTGATTAAGAAAGTCATTGAAGAGCACCAAATTCTCAGAAGAA 1213
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1116 AAGAAGAGCACAAGGAACTGATTAAGAAAGTTATTGAGGAGCACCAAATTCTCAGAAGAA 1175
Query 1214 TCGAGGATCTTCAGGAAGCTAGAACTGCTGGTTGCAGGACAACTTCAGACGCAAATAGAT 1273
|| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1176 TCCAGGATCTTCAGGAAGCTAGAAATGCTGGTTGTAGGACAACTTCAGAAGCAAATAGAT 1235
Query 1274 TTATagaagagaagagaaagaaggaagctgaagaaagTATGCTGCTGCGGCTTAACCACG 1333
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1236 TTATAGAAGAGAAGAGAAAGAAGGAAGCTGAAGAAAGTGTGCTGCTGCGACTTAACCACG 1295
Query 1334 GTGCACCAGGCAGTATAGCCGGTAAAACACTAAAAAGTCCAAGAGGGTTACCCAGAAATT 1393
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1296 GTGCACCAGGCAGTATAGCCGGTAAAACATTAAAAAGTCCAAGAGGGTTACCCAGAAATT 1355
Query 1394 TGCATCCCTTTGGTTCTGACTCACTGCCAAAGGTCACACCTCCAAGAATATACAGCGGTT 1453
|||| ||||||||||| || ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1356 TGCAGCCCTTTGGTTCCGATTCACTGCCAAAGGTCACTCCTCCAATAATATATAGCGGTT 1415
Query 1454 TGGACACTTGGGATGTTGATGGTCTCCTTGGAGCTGACTTACTCTCAGAGACCGAAAAGA 1513
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 1416 TGGACACTTGGGATGTTGATGGTCTCCTTGGAGCTGACTTGCTCTCTGAGACTGAAAAAA 1475
Query 1514 AGATGTGCAATGAGACCAGAATACTGCCTGTACACTATTTGAAGATGTTGGATATCTTAA 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 AGATGTGCAATGAGACCAGAATACTGCCTGTACACTATTTGAAGATGTTGGATATCTTAA 1535
Query 1574 CAAGAGAAATAAAGAAGGGGCAGATAAAGAAAAAGTCTGATGCTTATAGCTTCTTCAAAG 1633
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CAAGCGAAATAATGAAGGGGCAGATAAAGAAAAAGTCTGATGCTTATAGCTTCTTCAAAG 1595
Query 1634 TAGAGCCGAGTAAAGTAGACAGAGTATATGATATGCTGGTTCATAAGGGAATAGGTGACT 1693
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1596 TAGAGCCGAGTAAAGTAGACAGAGTATATGATATGCTGATTCAGAAGGGAATAGGTGAGT 1655
Query 1694 CAACATGACTCAT-AGCTTCATGGTCCTAACATGTACTTCTCGAACATATATTAGCCATG 1752
||||||||||||| ||||||||||||||||||| | | | | || ||||||
Sbjct 1656 CAACATGACTCATTAGCTTCATGGTCCTAACAT--A-T-----A---T-TA---GCCATG 1700
Query 1753 TAAATATAAAGGAAGGTGATGCTGATTTTGGTTACACATCTTGTTCTCTGTTAGTTTCGA 1812
|| ||||| |||||||||||| || |||||||| |||||||| || ||| || ||
Sbjct 1701 TACATATATAGGAAGGTGATGTTGGTTTTGGTTCCACATCTTATTA---GTT--TT--GA 1753
Query 1813 CAACTTGACAATGTCTGATTGTTATGACCTTCAAAGGCTGTTTCAGATTTTTTGATACAA 1872
|||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1754 CAACTTGACATTGTCTGATTGTTATCTCCTTCGAAGGCTGTTTCAGATCTTTTGATACAA 1813
Query 1873 CGTTTAAA 1880
|| |||||
Sbjct 1814 CGCTTAAA 1821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5