BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07750.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903674 jgi|Araly1|903674|Al_scaffold_0003_802 1472 0.0
> Ahg903674 jgi|Araly1|903674|Al_scaffold_0003_802
Length=864
Score = 1472 bits (797), Expect = 0.0
Identities = 840/861 (98%), Gaps = 2/861 (0%)
Strand=Plus/Plus
Query 101 TGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAA 160
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5 TGGGGCTTTCTCTTGGGGAACAACATTTCGTTAAAGGTGGGATTGCTCAAGATCTTCGAA 64
Query 161 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 124
Query 221 AGGCTAATGGTTCAGCGAGAGTT-AGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAG 279
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 125 AGGCTAATGGTTCAGCGAGAGTTAAG-ATAGGTGGAACCGATGTGATTGCTAGTGTAAAG 183
Query 280 GCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATT 339
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 184 GCTGAGATTGGGAGGCCAAGTTCACTCCAACCCGATAAAGGAAAGGTTGCAGTATTCATT 243
Query 340 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 303
Query 400 GAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 459
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGCTTGCTTTGGCTCTTCATAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 363
Query 460 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 423
Query 520 GGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 579
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GGCCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 483
Query 580 GCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 639
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCTTTAACCAACACGGCCATTCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 543
Query 640 CAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCG 699
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 544 CAACCAGAGATTGACATCAGCGACGAGGAATATCTACAATTTGACACTTCCAGTGTCCCG 603
Query 700 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 663
Query 760 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGG 819
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 664 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGGCAGGCCATATATGCGGG 723
Query 820 TTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTT 879
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTAACCAAACGAGGCGGATCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTG 783
Query 880 GCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAG 939
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 784 GCCAAGCATGTGACAGAGAATCTGATGAGCAAACTTGATTCTGAGATTTCAGCTGCAGAG 843
Query 940 GCCTGCGAAGACGAATCTTGA 960
|| | ||||||||||||||||
Sbjct 844 GCATCCGAAGACGAATCTTGA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5