BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07760.1

Length=876
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928460 jgi|Araly1|928460|scaffold_300917.1                        734    0.0  


> Ahg928460 jgi|Araly1|928460|scaffold_300917.1
Length=467

 Score =  734 bits (397),  Expect = 0.0
 Identities = 407/412 (99%), Gaps = 0/412 (0%)
 Strand=Plus/Plus

Query  182  AGAGGAAAGGATGACCAGAGAACATCCTCCCGAGCCTCTTGATTTCTTCATCTGGACTGT  241
            |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  56   AGAGGAAAGGATGAACAGAGAACATCCTCCTGAGCCTCTTGATTTCTTCATCTGGACTGT  115

Query  242  TGAGGATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAA  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  116  TGAGGATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAA  175

Query  302  AGAAAATGGTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACTACCGAGCAGAT  361
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  176  AGAAAATGGTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACAACCGAGCAGAT  235

Query  362  CCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCATCACCCTCTGTAAAGA  421
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  236  CCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCATTACCCTCTGTAAAGA  295

Query  422  ACTCAGAAGGATTAAAGTGGCTTGCTTGAAAGGTGAGCAGAGAGTTAGACGGCCATGGTG  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  ACTCAGAAGGATTAAAGTGGCTTGCTTGAAAGGTGAGCAGAGAGTTAGACGGCCATGGTG  355

Query  482  GGCACCGTCTTGTCTATCCGTAGTCTTTGTTAAGGCAGCCAAACGCAACCGACAGTCTCG  541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  GGCACCGTCTTGTCTATCCGTAGTCTTTGTTAAGGCAGCCAAACGCAACCGACAGTCTCG  415

Query  542  TGTTGTATCTCTCAAGCTTGAATCTTGACATTACACTTTGGCTGTTTATGTA  593
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  416  TGTTGTATCTCTCAAGCTTGAGTCTTGACATTACACTTTGGCTGTTTATGTA  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32442602367


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5