BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07780.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340965 jgi|Araly1|340965|fgenesh1_pg.C_scaffold_3000728 2750 0.0
Ahg494868 jgi|Araly1|494868|fgenesh2_kg.8__684__AT5G48160.2 1136 0.0
> Ahg340965 jgi|Araly1|340965|fgenesh1_pg.C_scaffold_3000728
Length=1704
Score = 2750 bits (1489), Expect = 0.0
Identities = 1633/1704 (96%), Gaps = 3/1704 (0%)
Strand=Plus/Plus
Query 85 ATGGGCACATCATCTGGGTCCAATCTTCCTCACCAGATGCTACCTCCACGTCAGCAACTA 144
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACATCATCTGGCTCCAATCTTCCTCACCAGATGCTACCTCCACGTCAGCAACTA 60
Query 145 CAAACATCTCTTTCGCTTGTATCTTCAGATCCCCACTTGTCACGGTCTAATTCTGGCATT 204
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 CAAACATCTCTTTCACTTGTATCTTCGGATCCCCACTTGTCACGATCTAATTCTGGCATT 120
Query 205 GTGCGTGAATCACCAGCTGAAAGTGCTAGCTCTCAAGAAACTTGGCCAACCTCAAAATCT 264
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCGTGAATCACCAGCTGAAAGTGCTAGCTCTCAAGAAACTTGGCCAACCTCAAAATCT 180
Query 265 ATTATGGGAAGGAAGACAGATAGCGGAAAGACAGGGCCTGACTCTCATGATCAACATGTG 324
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATTATGGGAAATAAGACAGAGAGCGGAAAGACAGGGCCTGACTCTCATGATCAACTTGTC 240
Query 325 ATCCGCCATGTTTCCATTGCTGATAAGGTATCGCTACGGGACATAGCTAGAGAGAGACTT 384
||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||| ||
Sbjct 241 ATCCGCCATCTTTCCATTGCTGATAAGGTATCACTACGGGACATAGCTAGGGAAAGAGTT 300
Query 385 GACATAGTCGCTGAGAGAATGCATCGATTACCAGAAGAATATCTCGAGGAGTTAAAGAAT 444
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 301 GACATAGTCGCTGAGAGAATGCACCGATTACCAGAAGAATATCTCGACGAGTTAAAGAAC 360
Query 445 GGTCTTAAGGCTATCCTTGAAGGAAATGGTGCGCAGCCTATAGATGAGTTTATGTTTCTG 504
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GGCCTTAAGGCTATCCTTGAGGGAAATGGTGCCCAGCCTATAGATGAGTTTATGTTTCTG 420
Query 505 CAGAAGTTTGTCCAGACGAGATCTGATTTAACTTCAAAGACACTTGTCAGGGCTCACCGA 564
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAAGTTTGTCCAGACCAGATCTGATTTAACTTCAAAGACACTTGTCAGGGCTCACCGA 480
Query 565 GTGCAGCTTGAAGTTCTTGTGGTTATAAACACTGGTATCCAAGCATTCTTGCACCCAAAC 624
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GTGCAGCTTGAAATCCTTGTGGTTATAAACACTGGAATCCAAGCATTCTTGCACCCAAAC 540
Query 625 ATCAATCTCTCTCAGTCATCACTCATCGAGATCTTTGTGTACAAGAGATGCAGAAACATA 684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCAATCTCTCTCAGTCATCGCTCATCGAGATCTTTGTGTACAAGAGATGCAGAAACATA 600
Query 685 GCTTGCCAAAACGAACTCCCGGCTGATGGTTGTCCCTGTGAGATATGCGCTAATAGGAAA 744
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GCGTGCCAAAACGAACTCCCGGCTGATGGTTGTCCCTGTGATATATGCGCTAATAGGAAA 660
Query 745 GGCTTCTGCAACCTGTGCATGTGTGTGATATGTAACAAGTTTGACTTTGCAGTCAACACA 804
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 661 GGCTTCTGCAACCTGTGCATGTGTGTGATCTGTAACAAGTTTGACTTTGCGGTCAACACA 720
Query 805 TGCCGCTGGATTGGCTGCGACGTGTGTTCTCATTGGACTCATACGGATTGTGCTATTAGG 864
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGCCGCTGGATTGGCTGCGATGTGTGTTCTCATTGGACTCATACGGATTGTGCTATTAGG 780
Query 865 GATGGGGAGATTTCGATGGGAGTTTCTCCCAAGAGCGTATCTGGGATGGGAGAAATGCTG 924
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 GATGGAGAGATTTCGATGGGAGTTTCTCCCAAGAGCGTATCTGGGATGGGAGAAATGTTG 840
Query 925 TTCAAGTGTCGAGCGTGCAACCATACTTCTGAATTGCTGGGGTGGGTGAAAGATGTGTTT 984
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TTCAAGTGTCGAGCCTGCAACCATACTTCTGAATTGCTGGGGTGGGTTAAAGATGTGTTT 900
Query 985 CAGCACTGTGCACCAAACTGGGATAGGGAATCTTTAATGAAGGAACTTGACTTCGTTAGT 1044
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 901 CAGCACTGTGCACCAAACTGGGATAGGGAATCTTTGATGAAGGAACTAGACTTCGTGAGT 960
Query 1045 AGGATTTTCCGTGGAAGCGAAGATACAAGAGGCCGGAAACTCTTCTGGAAGTGTGAGGAG 1104
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 961 AGGATTTTCCGTGGAAGCGAAGATACAAAAGGCCGGAAACTATTCTGGAAGTGTGAGGAA 1020
Query 1105 CTTATGGAGAAGATTAAAGGTGGACTGGCTGAAGCAACAGCGGCCAAGTTGATACTCATG 1164
||||| || ||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 1021 CTTATTGACAAGATTAAAGGTGGAATGGCGGAAGCAACAGCTGCCAAGTTGATACTGATG 1080
Query 1165 TTTTTCCAAGAAATTGAATTGGACTCTCCAAAGAGCCTTGAAAGCGGAGAAGGTGGGGGT 1224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTTTCCAAGAAATTGAATTGGACTCTCCAAAGAGCCTTGAAAGCGGAGAAGGTGGGGGA 1140
Query 1225 ACGATAGCACCTCAAGATGCATGCAACCGAATTGCTGAAGTTGTAAAGGAAACACTGAGG 1284
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 ACAATAGCACCTCAAGATGCATGCAACCGAATTGCTGAAGTTGTAAAGGAAACACTGCGG 1200
Query 1285 AAAATGGAGATAGTGGGTGAGGAAAAGACGAGGATGTACAAGAAAGCGCGAATGGGGCTT 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAATGGAGATAGTGGGTGAGGAAAAGACGAGGATGTACAAGAAAGCGCGAATGGGGCTT 1260
Query 1345 GAGGAATGCGAGAGAGAGGTAGAAGAGAAAGCAAAGCAAGTGGCGGAACTGCAGATGGAG 1404
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAGGAATGCGAGAGAGAGGTGGAAGAGAAAGCAAAGCAAGTGGCGGAACTGCAGATGGAG 1320
Query 1405 AGGCAGAAGAAGAAACAACAGATAGAAGAGGTGGAGAGGATAGTGAGGCTGAAGCAAGCA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGCAGAAGAAGAAACAACAGATAGAAGAGGTGGAGAGGATAGTGAGGCTGAAGCAAGCA 1380
Query 1465 GAGGCAGAGATGTTTCAGTTAAAAGCAAACGAGGCAAAAGTGGAAGCAGAGAGATTGGAA 1524
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1381 GAGGCAGAGATGTTTCAGTTAAAAGCAAACGAAGCGAAAGTGGAAGCAGAGAGATTGGAG 1440
Query 1525 AGGATTGTGAAAGCGAAAAAGGAGAAAACAGAAGAGGAATACGCAAGTAACTATTTGAAA 1584
||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1441 AGGATTGTGAAAGCGAAGAAGGAAAAAACAGAAGAGGAATACGCGAGTAACTACTTGAAA 1500
Query 1585 CTGAGGCTGAGCGAGGCGGAGGCAGAGAAAGAGTATCTGTTTGAAAAGATAAAAGAGCAG 1644
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CTGAGGCTGAGCGAGGCAGAGGCAGAGAAAGAGTATCTGTTTGAAAAGATAAAAGAGCAA 1560
Query 1645 GAAAGTGGTGGGAATGGTGGTGAAGCGTCACAAGCAGTGATGTACTCAAAGATCAGAGAA 1704
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1561 GAAAGTGGTGGAAATGGTGGTGAGGCGTCACAAGCAGTGATGTACTCAAAGATCAGAGAA 1620
Query 1705 ATGCTGCATGGATACAATGCATCGTC---GCCAAGGGTAGATCCAAGATCAAACCAGCGA 1761
||||| |||||||||||||| || || |||||| |||||||||||||| |||||||||
Sbjct 1621 ATGCTTCATGGATACAATGCCTCTTCTTCGCCAAGAGTAGATCCAAGATCTAACCAGCGA 1680
Query 1762 AATCCTTTCAGATCCAATCCTTAG 1785
||||||||||||||||||||||||
Sbjct 1681 AATCCTTTCAGATCCAATCCTTAG 1704
> Ahg494868 jgi|Araly1|494868|fgenesh2_kg.8__684__AT5G48160.2
Length=1960
Score = 1136 bits (615), Expect = 0.0
Identities = 1402/1769 (79%), Gaps = 105/1769 (6%)
Strand=Plus/Plus
Query 81 ATTGATGGGCACATCATCTGGGTCCAATCTTCCTCACCAGATGCTACCTCCACGTCAGCA 140
||||||||||||||| ||||| ||||||| ||||||||||||| |||| |||||||| ||
Sbjct 139 ATTGATGGGCACATCGTCTGGTTCCAATCATCCTCACCAGATGTTACCACCACGTCAACA 198
Query 141 ACTACAAACATCTCTTTCGCTTGTATCTTCAGATC-CCCACTTGTCA-CGGTCTAATTC- 197
|| || || || | || | | ||| || |||| || | | || | ||
Sbjct 199 ACAACGAA-ATGGAGGT--CTCG-A--AACAGCTCTTTCACTCGT-ATC-TTCGGA-TCA 249
Query 198 TG-G-CATTGTGCGTGAATCACCAGCTGAAAGTGCTAGCTCTCAAGAAACTTGGCCAACC 255
| | || || || || || ||||| || ||||| || ||||||||||| ||||| | |
Sbjct 250 GGAGCCA-CGT-CGCGAGTCTCCAGCCGAGAGTGCGAGTTCTCAAGAAACATGGCC-A-C 305
Query 256 TC--A-AAATCTATT-ATGGGAAGGAAGACAGAT-AG-CGGAAAGACAGG-GCCTGACTC 308
|| | | | || || ||||| |||||||| | || | |||||| || |||||| ||
Sbjct 306 TCGGAGACA-CTGTTGCGGGGAA-GAAGACAG-TGAGTC-AAAAGAC-GGAGCCTGATTC 360
Query 309 TCA-TGATCAACA--TG--TG--ATCCGCCATGTTTCCATTGCTGATAAGGTATCGCTAC 361
| | || ||| | || || || | |||||| || | ||| |||||||||||| |||
Sbjct 361 T-ACGGAACAAAATGTGAATGTTATGCACCATGTGTCGAATGCGGATAAGGTATCGGTAC 419
Query 362 GGGACATAGCTAGAGAGAGACTTGACATAGTCGCTGAGAGAATGCATCGATTACCAGAAG 421
|||| |||||||| || ||| |||| | || || ||||||||||||||||| || || |
Sbjct 420 GGGATATAGCTAGGGAAAGAGTTGAGTTGGTTGCGGAGAGAATGCATCGATTGCCGGATG 479
Query 422 AATATCTCGAGGAGTTAAAGAATGGTCTTAAGGCTATCCTTGAAGGAAATGGT-GCGCAG 480
| | ||| || ||||||||||| ||||||||| |||| ||||| || ||| || ||||||
Sbjct 480 AGTTTCTTGATGAGTTAAAGAACGGTCTTAAGTCTATACTTGAGGGGAAT-GTAGCGCAG 538
Query 481 CCTATAGATGAGTTTATGTTTC-TGCAGAAGTTTGTCCAGACG-AGATCTGATTT-AACT 537
| | |||||||| ||| ||| |||||||| |||| |||| | ||||||||||| | |
Sbjct 539 AGTGTGGATGAGTTCATG-TTCTTGCAGAAGCTTGTTCAGA-GTAGATCTGATTTGAGC- 595
Query 538 TC-AAAGACACTTGTCAGGGCTCACCGAGTGCAGCTTGAAG-TTCTTGTGGTTATAAACA 595
|| | | |||||||| || ||||| || |||||||||| || | ||||| | ||||| |
Sbjct 596 TCTACA-ACACTTGTTAGAGCTCATCGGGTGCAGCTTG-AGATACTTGTAGCGATAAATA 653
Query 596 CTGGTATCCAAGCATTCTTGCACCCAAACATCAATCTCTCTCAGTCATCACTCATCGAGA 655
| || || || || |||||||| || ||||||| ||| |||||| | || || |||||||
Sbjct 654 CCGGGATTCAGGCGTTCTTGCATCCGAACATCAGTCTGTCTCAGCCGTCTCTTATCGAGA 713
Query 656 TCTTTGTGTACAAGAGATGCAGAAACATAGCTTGCCAAAACGAACTCCCGGCTGATGGTT 715
| ||||| ||||||||||| ||||||||||| || |||||| |||| |||||||||| ||
Sbjct 714 TTTTTGTATACAAGAGATGTAGAAACATAGCCTGTCAAAACCAACTACCGGCTGATGATT 773
Query 716 GTC-CCTGTGAGATATGCGCTAATAGGAAAGGCTTCTGCAACCTGTGCATGTGTGTGATA 774
| | ||| || |||||| |||| |||||||| ||||||||||| || |||||| |||
Sbjct 774 G-CTACTGCGAAATATGCACTAACAGGAAAGGGTTCTGCAACCTTTGTATGTGTACGATC 832
Query 775 TGTAACAAGTTTGACTTTGCAGTCAACACATGCCGCTGGATTGGCTGCGACGTGTGTTCT 834
|||||||||||||| ||| | ||||| || ||||||||||| || |||||| |||||||
Sbjct 833 TGTAACAAGTTTGATTTTTCTGTCAATACTTGCCGCTGGATCGGATGCGACTTGTGTTCC 892
Query 835 CATTGGACTCATACGGATTGTGCTATTAGGGATGGGGAGATTTCGATGGGAGT-TTCTCC 893
|| ||||||||||| |||||||||||| ||||||| |||| | | |||| | ||| |
Sbjct 893 CACTGGACTCATACAGATTGTGCTATTCGGGATGGACAGATCACCACGGGA-TCCTCTGC 951
Query 894 CAAGAGCGTATCTGGGATGGGAGAAAT-GCTGTTCAAGTGTCGAGCGTGCAACCATACTT 952
|||| ||| || |||||||| | |||||||||| || || || || | || |
Sbjct 952 TAAGAATACATCAGGTCCAGGAGAAATAG-TGTTCAAGTGCCGGGCTTGTAATCGGACGT 1010
Query 953 CTGAATTGCTGGGGTGGGTGAAAGATGTGTTTCAGCACTGTGCACCAAACTGGGATAGGG 1012
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1011 CTGAGCTGCTGGGATGGGTTAAAGATGTGTTTCAGCACTGTGCACCAAACTGGGATCGGG 1070
Query 1013 AATCTTTAATGAAGGAACTTGACTTCGTTAGTAGGATTTTCCGTGGAAGCGAAGATACAA 1072
||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1071 AATCTTTGATGAAGGAACTCGACTTTGTTAGTAGGATTTTCCGCGGAAGCGAAGAT-CAA 1129
Query 1073 -GAGGCCGGAAACTCTTCTGGAAGTGTGAGGAGCTTATGGAGAAGATTAAAGGTGGACTG 1131
|||| ||||||| || |||||||||||||||||||| || |||||||||||||| ||
Sbjct 1130 CGAGGTAGGAAACTGTTTTGGAAGTGTGAGGAGCTTATCGACAAGATTAAAGGTGGTTTG 1189
Query 1132 GCTGAAGCAACAGCGGCCAAGTTGATACTCATGTTTTTCCAAGAAATTGAATTGGACTCT 1191
||||||||||| || ||||| |||||| | |||||||||||||| || ||||| |||||
Sbjct 1190 GCTGAAGCAACTGCTGCCAAATTGATATTAATGTTTTTCCAAGAGATCGAATTAGACTC- 1248
Query 1192 C-CAAAGAGCCTTGAAAGCGGAGAAGGTGGGGGTACGATAGCACCTCAAGATGCATGCAA 1250
| | |||||| |||||| |||||||| || || ||| |||||||| |||||||||||
Sbjct 1249 CGCGAAGAGCTTTGAAAATGGAGAAGGCGGACGTTTGATGGCACCTCAGGATGCATGCAA 1308
Query 1251 CCGAATTGCTGAAGTTGTAAAGGAAACACTGAGGAAAATGGAGATAGTGGGTGAGGAAAA 1310
||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1309 CCGAATTGCTGAAGTTGTACAGGAAACTCTGAGGAAAATGGAGATAGTGGCTGAGGAGAA 1368
Query 1311 GACGAGGATGTACAAGAAAGCGCGAATGGGGCTTGAGGAAT-GCGAGAGAGAGGTAGAAG 1369
|| |||||||| |||||| || || |||| || ||| | | | || |||||| | ||||
Sbjct 1369 GATGAGGATGTTCAAGAAGGCACGCATGGCTCTCGAG-ACTTGTGATAGAGAGCTCGAAG 1427
Query 1370 AGAAAGCAAAGCAAGTGGCGGAACTGCA-GATGGAGAGGCAGAAGAAGAAACAACAGATA 1428
| ||||| ||| |||| || |||||| | | |||||||||||||||||||| ||||||
Sbjct 1428 ACAAAGCCAAGGAAGTAGCAGAACTGAAAGC-GGAGAGGCAGAAGAAGAAACTTCAGATA 1486
Query 1429 GAAGAGGTGGAGAGGATAGTGAGGCTGAAGCAAGCAGAGGCAGAGATGTTTCAG-TTAAA 1487
|| ||| | ||||| || |||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1487 GACGAGTTAGAGAGAATTGTGAGGCTGAAGCAAGCAGAGGCAGACATGTTCCAGCTTAAA 1546
Query 1488 AGCAAACGAGGCAAAAGTGGAAG-CAGAGAGATTGGAAAGGATTGTGAA-AGCGAAAAAG 1545
|||||||| ||||| | || || | || |||||| | |||||||| | |||||||| |
Sbjct 1547 -GCAAACGAAGCAAA-GCGGGAGGCTGATAGATTGCAGAGGATTGT-ACTAGCGAAAATG 1603
Query 1546 GAGAAAACAGAAGAGGAATACGCAAGTAACTATTTGAAACTGAGGCTGAGCGAGGCGGAG 1605
|| || | || ||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 1604 GATAAGTCTGAGGAGGAATACGCAAGTAACTATCTGAAACAGAGGCTGAGCGAGGCCGAG 1663
Query 1606 GCAGAGAAAG-AGTATCTGTTTGAAAAGATAAAAGA-GCAGGAAAGT--G-G--TGG--- 1655
|||||||| | ||||||||||||| ||||| || | |||||||| | | | |||
Sbjct 1664 GCAGAGAA-GCAGTATCTGTTTGAGAAGATTAA-GCTGCAGGAAAATTCGAGGGTGGCAT 1721
Query 1656 ----GA--A-TGGTGGTGAAG----C--GTCACAAGC-AGTGATGTACTCAAAGATCAGA 1701
|| | ||| |||| || | |||||| | | ||||||||||||||||| |
Sbjct 1722 CACAGAGCAGTGGCGGTGGAGGTGACCCGTCACAGGTGA-TGATGTACTCAAAGATCCGC 1780
Query 1702 GAAATGCTGCATGGATACAATGCATCGTCGCC-AAGGGTAGATCCA-AGATCAAACCAGC 1759
|| |||| || ||||||||| | || || || |||| ||||||| | ||||||| |||
Sbjct 1781 GATCTGCTTCAAGGATACAAT-C-TC-TCTCCCAAGG-TAGATCCTCA-ATCAAACGAGC 1835
Query 1760 GAAATCCTTTCAGATCCAATCCTTAGATG 1788
| |||||||||||||||||||||| ||||
Sbjct 1836 GTAATCCTTTCAGATCCAATCCTT-GATG 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5