BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07790.1
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478116 jgi|Araly1|478116|fgenesh2_kg.3__817__AT3G07790.1 2693 0.0
> Ahg478116 jgi|Araly1|478116|fgenesh2_kg.3__817__AT3G07790.1
Length=1791
Score = 2693 bits (1458), Expect = 0.0
Identities = 1663/1759 (95%), Gaps = 25/1759 (1%)
Strand=Plus/Plus
Query 93 CTTTTTGAATTCG-CGTTCTTCTGATTCAAGATGTTTCTTTCACCTGGTCATTCTCCTCG 151
||||||||||||| || ||||||||||||||||||||| || |||||||||||||| ||
Sbjct 53 CTTTTTGAATTCGCCG-GCTTCTGATTCAAGATGTTTCTATCGCCTGGTCATTCTCCGCG 111
Query 152 TCAGATTTCTTCTCCATCGCCGTCTTCTTATTCCGATGATACCCTCCGATCAACGCCTCG 211
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 112 GCAGATTTCTTCTCCATCGCCGTCGTCTTATTCCGATGATACCATCCGATCGACGCCTCG 171
Query 212 CAGTTCTTCCTCGGAGATCATTCCTCGAAACCCTAGAAAACGGATGAGAGTTCTCGATGA 271
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 172 CAGTTCTTCCTCGGAGATCATTCCTCGGAACCCTAGAAAACGGATGAGAGTTCTTGATGA 231
Query 272 GGACGCTTATGTTGAAGCAATCGAGAAGATCATCGAGCGTGATTACTTTCCAGATATAAC 331
|| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 232 AGATGCGTATGTTGAAGCAATCGAGAAGATCATCGAGCGTGATTATTTTCCGGATATAAC 291
Query 332 TAAGCTTAGGGATCGGCTCGATTGGATCCAAGCGGTGAAAACCCGTGACCCGATTCAAAT 391
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 292 TAAGCTTAGGGATCGGCTCGATTGGATCCAAGCGGTTAAAACCCGTGACCCGATTCAAAT 351
Query 392 CCGAGATGCCCAGTTGAAGATTATCGAGAGGCGTGGAAAGAAGGCGAATCATCATGTTGG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCGAGATGCCCAGTTGAAGATTATCGAGAGGCGTGGAAAGAAGGCGAATCATCATGTTGG 411
Query 452 AGATACCGAGGGTAAAACTCAAACTCCTGGATCTACTTTTCTGAGAAATTTCACTCCTTT 511
|| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 412 GGACACCGAGGGTAAAACTCAAACTCCTGGATCTACTTTTCTCAGAAATTTTACTCCTTT 471
Query 512 AGATGAATTTGATGGTAAAACCCCTAGAACTCCTGGAGTATCTGGTAGAGAATTTCATGG 571
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGATGAATTCGATGGTAAAACCCCTAGAACTCCTGGAGTATCTGGTAGAGAATTTCATGG 531
Query 572 TGTTGAAGTAGATGCTGGTGATGGAGATGAAGATATAGATCTTAATTTGTCCCTAGATGA 631
|| |||||||||||||| || |||||||| |||||||||||||||||||||| |||||||
Sbjct 532 TGGTGAAGTAGATGCTGATGCTGGAGATGGAGATATAGATCTTAATTTGTCCTTAGATGA 591
Query 632 GTTCTTTAGGAGATATACTAGTGAGGATAACGAGAGCTTTTCGAAGATTCTTGAGAAGGT 691
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 592 GTTCTTTAGGAGATATACAAGTGAGGATAACGATAGCTTTTCGAAGATTCTTGAGAAGGT 651
Query 692 AAATAGGAAGAAGAAGGAGAAGTATGGCTTTCTCCTTGAAGGTGAAAAGGAGGATGGTAA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 AAATAGGAAGAAGAAGGAGAAGTATGGCTTTCTCCTTGAAGGTGAAAAGGAGGATGGGAA 711
Query 752 ATCTATTGAGGATGTGAAGAGAGATAGGATTACAGATGGGTATGGTACATCTGATCAGCC 811
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ATCGATTGAGGATTTAAAGAGAGATAGGATTACAGATGGGTATGGTACATCTGATCAGCC 771
Query 812 ACCGAGTACTTTAGAAGGATGGAAATATACGGCGAAGAATCTTCTGATGTACCATCCAGC 871
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 ACCAAGCACTTTAGAAGGATGGAAATATACTGCGAAGAATCTTCTGATGTACCATCCAGC 831
Query 872 TGATCGGGGTGAGGCGCCTTTAACTGAGGCGGAAAGGGCAGTGAGATTACTTGGATTGAC 931
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 832 TGATCGGGGTGAGGCGCCTTTAACTGAGGCGGAAAGGGCTGTGAGATTACTTGGATTGAC 891
Query 932 TAAGGAGATAGTTAAAGGGAACACTCGTTTTCATGGTAAGACTATGGATTCTAGGCCAAG 991
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 892 AAAGGAGATTGTTAAAGGGAACACTCGTTTTCATGGGAAGACTATGGATTCTAGGCCAAG 951
Query 992 AGAAGATGGTTCTGTTGAGATTCTCTACACTCCAATCGCAGGTTCTTCCCCGATGCATAT 1051
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGAAGATGGCTCAGTTGAGATTCTCTACACTCCAATCGCAGGTTCTTCCCCGATGCATAT 1011
Query 1052 CTCAGGTAGGGACAGAGACAAGTCTAAAAGGTATGATCTTGATGATCTAAGGAAAACACC 1111
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1012 CTCAGGTAGGGACAGAGACAAATCTAAGAGGTATGATCTTGATGATCTAAGGAAAACCCC 1071
Query 1112 GAATCCTTTCTATGTGGAATCAGATAAGAGGGCAGACAATGGGTATAGTTTTGTTAGAAC 1171
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1072 GAATCCTTTCTATGTGGAATCAGATAAGAGGGCAGAGAATGGGTATAGTTTTGTTAGAAC 1131
Query 1172 GCCTTCTCCTGCTCCAGGTCTTGATGAATCACCCTTTATAACATGGGGTGAGATTGATGG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCCTTCTCCTGCTCCAGGTCTTGATGAATCACCCTTTATAACATGGGGTGAGATTGATGG 1191
Query 1232 GACACCAATGCGATTAGATCTTGAGGATACACCTATTGATATTGGTGGTAGTGCTGATGG 1291
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 GACACCAATGCGATTAGATCCTGAGGATACACCCATTGATATTGGTGGTAGTGCTGATGG 1251
Query 1292 ACCGCACTATAACATTCCATCTGCACCTCCTAGAGATGTAAGGGCACATTCATTATCAAG 1351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ACCGCACTACAACATTCCATCTGCACCTCCTAGAGATGTAAGGGCACATTCATTATCAAG 1311
Query 1352 GGATGCATCGCGAAAACTTAGAGAGAGATCGAATAGTATGTTTAAGAAACCTCCGTTGCC 1411
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1312 GGATGCATCGCGAAAAATTAGAGAGAGATCAAATAGTATGTTTAAGAAACCTCCGTTGCC 1371
Query 1412 ATCTCCTCATCGAAGTGGAAGTGCAAGTCCGAATGTTAGGACTCTTTCACCCGCTGCTCA 1471
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1372 ATCTCCTCATCGAAGTGGAAGTGCAAGTCCAAATGTTAGGACACTTTCACCCGCTGCTCA 1431
Query 1472 GAAGTTTTTCAGAAAGGCAATAGCTAAATCATCTTCTACTGTTGATGAGAGCCTTCGTGC 1531
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAAGTTTTTTAGACGGGCAATAGCTAAATCATCTTCTACTGTTGATGAGAGCCTTCGTGC 1491
Query 1532 AAGTTATCGTGGAGCAAGTCCTCGTGGAGCAAGTCCTGGTGCTGTGACTCCTAAGAGTGT 1591
|||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 1492 AAGTTATCGTGGAGCAAGTCCT-G-G-------T---G---CTGTGACTCCTAAGAGTGT 1536
Query 1592 GAGAAGTATTTCAAGATTTGGCAAAGATGGGACCAGCTCAGAGACAAGGTCGCCTTGATG 1651
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1537 GAGAAGTGTTTCAAGATTTGGCAAAGATGGGACAAGCTCAGAGACAAGGTCGCCTTGATG 1596
Query 1652 GTGCCAATGTTATGGTTATCTGTTGTTGAATGCTTTGGTGCTCACATAGGCAACAAAGTT 1711
| || ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1597 GCGCAAATGTTATGATTATCTGTTGTTGAATGCTTTGGTGCTCACAGAGGCAACAAAGAG 1656
Query 1712 ACTTCTTCTTGTACCA-AT-TACTGATATGACAGAT-TTTAAATGGAATGCTATCTATCT 1768
||||||||||||| | || | || | |||| | |||||||||||||||||||||||
Sbjct 1657 GCTTCTTCTTGTACTACATGTGCTT-T-TGACTT-TCTTTAAATGGAATGCTATCTATCT 1713
Query 1769 TCGCA-TTTGTAATTTTGACTTCCACATCTTCTCTTTTCTCTTAGCTCCCAGGCTACGCA 1827
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1714 TC-CAATTTGTAATTTTGACTTCCACCTCTTCTCTTTTCTCCTAGCTCCCAGGCTACGCA 1772
Query 1828 CTTCAATATTACAACATCA 1846
|||||||||||||||||||
Sbjct 1773 CTTCAATATTACAACATCA 1791
Score = 91.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 17 TTTTCCTGTCTACCCAAAAACAAACCCTAGTGTCCGAATTCTCGACAAA 65
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCTGTCTACCCAAAAACAAACCCTAGTGTCCGAATTCTCGACAAA 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69552787370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5