BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07800.1
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478117 jgi|Araly1|478117|fgenesh2_kg.3__818__AT3G07800.1 1751 0.0
> Ahg478117 jgi|Araly1|478117|fgenesh2_kg.3__818__AT3G07800.1
Length=1361
Score = 1751 bits (948), Expect = 0.0
Identities = 1178/1284 (92%), Gaps = 36/1284 (3%)
Strand=Plus/Plus
Query 147 TCTGCCATGGCGACTCTCAAAGCTTCCTTTTTGATCAAAACCCTCGACAGTGACGTCACC 206
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||
Sbjct 107 TCTGCCATGGCGACTCTCAAAGCTTCGTTTTTGCTCAAAACCCTCGACAGTGACGTCGCC 166
Query 207 GGAGATTTTCTCTCCGATCTGGAACGTCGTGGGTCAGGTGCTGTTCATGTTATCATGGGT 266
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 167 GGGGATGTTCTCTCCGATCTGGAACGTCGTGGGTCAGGTGCTATTCATGTTATCATGGGT 226
Query 267 CCTATGTTTTCTGGGAAATCGACCTCTCTCCTTCGCCGAATCAAGTCAGAGATCAGCGAC 326
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 227 CCTATGTTTTCTGGGAAATCGACCTCTCTCCTCCGCCGAATCAAGTCAGAGATTAGCGAC 286
Query 327 GGAAGAAGTGTTGCGATGCTGAAATCGAGTAAGGATACGAGATACGCAAAAGATTCGGTG 386
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 287 GGAAGAAGTGTTGCGATGCTGAAATCGAGTAAGGATACGAGATACGCCAAAGATTCAGTG 346
Query 387 GTGACACATGATGGAATTGGATTCCCTTGCTGGGCTCTTCCAGATCTCATGTCATTTCCT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTGACACATGATGGAATTGGATTCCCTTGCTGGGCTCTTCCAGATCTCATGTCATTTCCT 406
Query 447 GAGAAATTCGGACTAGATGCTTATAACAAGCTTGATGTGATTGGTATTGATGAGGCTCAG 506
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GAGAAATTCGGACAAGATGCTTATAACAAGCTTGATGTGATTGGTATTGATGAGGCTCAG 466
Query 507 TTCTTTGGAGATCTTTATGAGTTTTGCTGCAAAGTCGCTGATGATGATGGTAAAATTGTG 566
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 467 TTCTTTGGAGATCTTTATGAGTTTTGCTGCAAAGTCGCTGATGATGATGGCAAAACTGTG 526
Query 567 ATCGTTGCTGGCCTAGATGGTGACTATTTAAGGAGGAGTTTTGGGGCTGTACTTGACATT 626
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 527 ATCGTTGCTGGCCTAGATGGTGACTATCTAAGGAGGAGCTTTGGCGCTGTACTTGACATT 586
Query 627 ATACCAATAGCTGATTCTGTGACTAAGCTAACTGCAAGGTGTGAGGTCTGTGGACATAAA 686
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 ATACCAATAGCTGACTCTGTGACTAAGCTAACTGCAAGGTGTGAGGTTTGTGGACATAAA 646
Query 687 GCTTTCTTCACTTTAAGAAAGAATTGTGACACCAGAACTGAGCTTATTGGTGGAGCTGAT 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCTTTCTTCACTCTAAGAAAGAATTGTGACACCAGAACTGAGCTTATTGGTGGAGCTGAT 706
Query 747 GTCTATATGCCTGTTTGTCGCAAGCATTACATCACTAATCATATTGTTATTAAAGCCTCT 806
||||||||||||||||||||||||||||||||||||||||| ||| | || || |||
Sbjct 707 GTCTATATGCCTGTTTGTCGCAAGCATTACATCACTAATCACATT---A--AA-GCTTCT 760
Query 807 AAGAAAGTCTTGGAAGATTCTGACAAGGCTAGAGCTGAATCCTGTGTTGCTGCTACAATC 866
|||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 761 AAGAAAGTGTTTGAAGATTCTGACAAGGCAAGACCTGAATCCTGTGTTGCTGCTACCATC 820
Query 867 TAACTATAAATGATATGGAACAAGCAACATATGTTATGGTGAAgttttctttcttttttg 926
|||||||||||||||||||||||| ||||| |||||| ||||| ||||||| ||||||||
Sbjct 821 TAACTATAAATGATATGGAACAAGTAACATCTGTTATAGTGAAATTTTCTT-CTTTTTTG 879
Query 927 gttgtttggtttctttACTGGTCTGGTTTATCCTTAATGTTGTCTTTGAAATACACTTGT 986
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 880 CTTGTTTGGTTTTTTTACTGGTCTGGTTTATCCTCAATGTTGTCTTTGAAATACACTTGT 939
Query 987 GATGTTCATTGTATATAAATATAAGTTTGATGCTTTCTCTACAGCCTCTGGTCCATGTTT 1046
||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 940 GATGTTCCTTGTATATAAATATAAGTTTGATGCTTTCTCTATATCATCTGGTCCATGTTT 999
Query 1047 CATACTCTTC-ATTTTCCA-AGACCACTTAGTTTTTCGAGTTGGACTTACAATGTTGCGT 1104
|| || ||| | | | | | |||||| |||| |||||||||||||||||| || | |
Sbjct 1000 TATGCT-TTCTACTGGCGATAT-CCACTTGGTTTCTCGAGTTGGACTTACAATTTTACTT 1057
Query 1105 ATGAGAGGTTGTTTTGTGACAGAAGCATTTCTTTCATCAGATCCTGGATTTGATACTTGT 1164
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1058 ATGAGAGGTTGTTGTGTGACAGAAGCATTTCTTTCATCAGATCCTG-ATCTGATACTTGT 1116
Query 1165 GGATTCGCATTCTTCCATTGTTGCATTGCTCTG---G-TTTAAGAAGCACTGTTTTCTTG 1220
||||||| |||| ||||||||||||| ||||| | |||||||| ||||||||| |||
Sbjct 1117 GGATTCGAATTCCTCCATTGTTGCATGGCTCTATCTGCTTTAAGAAACACTGTTTTTTTG 1176
Query 1221 ATCCACCTTCATCACTGAAAGGTATCTCTAGGGAGCAAACTATTGATGCTAGAGGTGTCT 1280
|||||||||||||||||||||| ||||||||||||||| | | || |
Sbjct 1177 ATCCACCTTCATCACTGAAAGGGATCTCTAGGGAGCAA------G-T-CT--------C- 1219
Query 1281 CCACTGTTGTGAATCTCGAATCACTCTTTGGACCGAG-ACCATAGATCTTGACATCTACG 1339
| |||||||||||||| ||||||| ||||||||| || ||||||| ||||||||| || |
Sbjct 1220 C-ACTGTTGTGAATCTTGAATCACCCTTTGGACC-AGGACCATAGGTCTTGACATTTATG 1277
Query 1340 TCTACTTCATGCTGCTGTGAATATTGAAACTCTTGTTGCAGTCGGTTCTGTCTCCAGATC 1399
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1278 TCTACTTCATGCTGCAGTGAAGATTGAAACTCTTGTTGCAGTCGGTTCTGTCTCCTGATT 1337
Query 1400 TTAATGTAAGGATACATAAACATT 1423
||| ||||| |||||| |||||||
Sbjct 1338 TTATTGTAAAGATACACAAACATT 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5