BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07810.2
Length=2451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478119 jgi|Araly1|478119|fgenesh2_kg.3__820__AT3G07810.2 3738 0.0
> Ahg478119 jgi|Araly1|478119|fgenesh2_kg.3__820__AT3G07810.2
Length=2365
Score = 3738 bits (2024), Expect = 0.0
Identities = 2291/2411 (95%), Gaps = 53/2411 (2%)
Strand=Plus/Plus
Query 28 TCTATATCTCTAGAGCGCGTTACTGCGCGTCGTGAGTATGTTTTTATTGACGCCATTGAA 87
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCTCTATCTCTAGAGCGCGTCCCTGCGCGTCGTCAGTATGTTTTTATTGACGCCATTGAA 60
Query 88 ATTGGGTTAAATCGGTTTG----AATCGGATTGAACAAAAACTGTATTAATAATAattct 143
||||||||||||||| ||| || | || |||||||||||||||||||||||
Sbjct 61 ATTGGGTTAAATCGGATTGAACAAAAAAAAAAAAAAAAAAACTGTATTAATAATAATTCC 120
Query 144 tcctctacttttctc-tctgattgattccaatcttctttcattttcttcttcttcttctt 202
| || | || |||| ||||||||||||||||||| ||||| || ||||||||
Sbjct 121 TACT-T--TTCTCTCTTCTGATTGATTCCAATCTTGTTTCA--------TT-TTCTTCTT 168
Query 203 ctGGGGAAGGGGCAGGTTAAAATTATGCCATCTATTCAAATCGTGCCTATCCTCAGATCT 262
|||||||||||||||||| |||||||||| |||||||||| | | ||||||||||||
Sbjct 169 CTGGGGAAGGGGCAGGTT-AAATTATGCCCTCTATTCAAA---T--C-ATCCTCAGATCT 221
Query 263 TAACTCTTTTCTCTACGAGATTCGGCATCTGGGTTTTATTCTTCTTGAGCAAAATGCAAT 322
| | | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 222 T-AGTGTTTTCTCGACGAGATTCGGCATCTGGGTTTTATTCTTATTGAGCAAAATGCAAT 280
Query 323 CGGATAATGGAAAGCTTTTCATCGGTGGGATATCTTGGGACACCAATGAGGAACGTCTCA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CGGATAATGGAAAGCTTTTCATCGGTGGGATATCTTGGGACACCAATGAGGAACGTCTCA 340
Query 383 AGGAGTATTTCAGCAGTTTTGGAGAAGTGATCGAAGCTGTCATCTTGAAAGATCGTACCA 442
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 341 AGGAGTATTTCAGCAGTTTTGGAGAAGTGATCGAGGCTGTCATCTTGAAAGATCGCACCA 400
Query 443 CTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAGATTG 502
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 401 CTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGATTG 460
Query 503 TTATCACCGAAAAACATAATATTGATGGCAGATTGGTTGAAGCCAAGAAAGCTGTTCCCA 562
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 461 TTATCACGGAGAAACATAATATTGATGGGAGATTGGTTGAAGCCAAGAAAGCTGTTCCCA 520
Query 563 GAGATGACCAAAACATGGTAAATAGAAGCAACAGCAGTAGCATCCAAGGTTCTCCCGGTG 622
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 521 GAGATGACCAAAACATGGTAAATAGAAGCAACAGCAGCAGCATCCAAGGTTCTCCCGGGG 580
Query 623 GTCCAGGTCGCACAAGGAAGATATTTGTTGGAGGATTACCTTCTTCGGTTACAGAGAGTG 682
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 581 GTCCAGGTCGCACAAGGAAGATATTTGTTGGAGGATTACCTTCCTCTGTTACAGAGAGCG 640
Query 683 ATTTCAAGACGTATTTTGAGCAGTTTGGTACAACTACGGATGTGGTTGTCATGTATGATC 742
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 641 ATTTCAAGACGTATTTTGAGCAGTTTGGAACAACTACGGATGTGGTTGTTATGTATGATC 700
Query 743 ACAACACACAAAGGCCTAGAGGTTTCGGGTTTATAACCTACGATTCCGAGGAGGCGGTTG 802
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 701 ACAACACACAAAGGCCTAGAGGTTTCGGATTTATAACCTACGATTCCGAGGAGGCAGTTG 760
Query 803 AAAAGGTATTGCTCAAGACATTCCATGAACTAAATGGTAAAATGGTTGAGGTTAAGCGAG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 AAAAGGTATTGCTCAAGACATTCCATGAACTAAATGGTAAAATGGTTGAGGTTAAGCGAG 820
Query 863 CTGTTCCAAAGGAGTTATCTCCAGGTCCAAGTCGCAGTCCTCTTGGTGCAGGTTACAGCT 922
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 821 CTGTTCCAAAGGAGTTATCTCCAGGTCCAAGTCGCAGCCCTCTTGGTGCAGGTTACAGCT 880
Query 923 ATGGAGTTAATAGGGTCAATAACCTCCTTAATGGGTATGCTCAAGGGTTTAATCCCGCTG 982
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 881 ATGGAGTTAATAGGGTCAATAACCTTCTTAATGGATATGCTCAAGGGTTTAATCCCGCTG 940
Query 983 CAGTTGGAGGCTACGGACTTAGGATGGATGGTCGGTTCAGTCCGGTTGGTGCTGGAAGAA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CAGTTGGAGGCTACGGACTTAGGATGGATGGTCGGTTCAGTCCGGTTGGTGCTGGAAGAA 1000
Query 1043 GCGGGTTTGCAAATTACAGTTCTGGATACGGGATGAATGTGAACTTTGATCAGGGATTGC 1102
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1001 GCGGGTTTGCAAATTTCAGTTCTGGCTACGGGATGAATGTGAACTTTGAGCAGGGGTTGC 1060
Query 1103 CCACAGGGTTCACGGGAGGTACAAATTACAATGGAAATGTTGACTATGGCCGAGGAATGA 1162
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1061 CCACAGGGTTCACGGGAGGTACGAATTTCAATGGAAATGTTGACTATGGCCGAGGAATGA 1120
Query 1163 GCCCGTACTACATTGGTAACACAAACAGGTTTGGTCCTGCGGTTGGCTATGAAGGGGGCA 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GCCCGTACTACATTGGTAACACAAACAGGTTTGGTCCTGCGGTTGGCTATGAAGGGGGCA 1180
Query 1223 ACGGAGGAGGAAACTCATCCTTCTTCAGTTCGGTTACACGGAACTTATGGGGAAACAATG 1282
| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1181 ATGGAGGAGGAAACTCATCCTTCTTCAGTTCGGTTACACGAAACCTATGGGGAAACAACG 1240
Query 1283 GTGGTCTTAACTATAACAACAATAATACAAACTCAAACTCCAATACATATATGGGAGGAT 1342
| |||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 1241 GCGGTCTTAACTATAACAACAACACTACAAACTCAAATTCCAATACATACATGGGAGGAT 1300
Query 1343 CATCAAGTGGGAACAACACACTTAGTGGTCCATTTGGAAATTCAGGAGTCAATTGGGGTG 1402
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1301 CATCAAGTGGGAACAACACACTTAGTGGTCCATTTGGAAATTCTGGAGTCAATTGGGGTG 1360
Query 1403 CTCCTGGAGGAGGAAACAATGCTGTGAGTAACGAGAATGTGAAGTTTGGTTATGGAGGAA 1462
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1361 CTCCTGGAGGAGGAAACAATGCTGTTAGTAACGAGAACGTGAAGTTTGGTTATGGAGGAA 1420
Query 1463 ACGGTGAATCTGGTTTTGGGTTGGGAACAGGTGGTTATGCAGCAAGAAACCCAGGGGCTA 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 ACGGTGAATCTGGTTTTGGGTTGGGAACAGGTGGTTATGCAGCAAGAAACCCAGGGGCTA 1480
Query 1523 ACAAGGCAGCACCATCCTCTTCATTCTCTTCTGCCTCAGCAACCAACAACACGGGTTATG 1582
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1481 GCAAGGCAGCACCATCGTCTTCATTCTCTTCTGCCTCGGCAACCAACAACACGGGTTATG 1540
Query 1583 ATACAGCAGGACTTGCAGAGTTTTACGGGAATGGTGCAGTTTATAGTGA-CCCTACATGG 1641
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1541 ATACAGCAGGACTTGCAGAGTTTTACGGGAATGGTGCAGTTTATAGTGATCCC-ACATGG 1599
Query 1642 AGATCACCAACTCCTGAGACAGAAGGGCCTGCTCCTTTTAGCTATGGGATTGGAGGAGG- 1700
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1600 AGATCACCAACTCCTGAGACAGAAGGGCCTGCTTCTTTTAGCTATGGGATTGGAGGAGGA 1659
Query 1701 GGTTCCTTCTTCAGATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAG 1760
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GG-TCCTTCTTCAGATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAG 1718
Query 1761 TGTGAACAAGAGACAACCAAACAGAGGCGAGCCATCACGGTGAACGATCTGTGTCTTTTG 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TGTGAACAAGAGACAACCAAACAGAGGCGAGCCATCACGGTGAACGATCTGTGTCTTTTG 1778
Query 1821 GCGAATCTTTTAGATTATCTTCTTTTCCCTTCATACAAAGCCAGTGAGGACGAAACTTGA 1880
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1779 GCGAATCTTTTAGATTATCTTCTTTTCC-TTCATACAAAGCCAGTGAGGACGAAACTTGA 1837
Query 1881 TCATATCATCACCTAGAGCTAACCAGAGAATCCCGCAGACTTTTCTGTCATGGTTTGGTT 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TCATATCATCACCTAGAGCTAACCAGAGAATCCCGCAGACTTTTCTGTCATGGTTTGGTT 1897
Query 1941 TTCTAAATTCATTGTTCCTCCTAGGCttttttctgctttctttttttttctatttttgtt 2000
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1898 TTCTAAATTCATTGTTCCTCCTAGGCTTTTTTCTGCTTTCTTTTTTT--CTATTTTTGTT 1955
Query 2001 ttcttttcttctttcAATGAGGGACAGAAGAAACTGTATCAGTCTCCGGCGAGGCGGTAA 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 TTCTTTTCTTCTTTCAATGAGGGACAGAAGAAACTGTATCAGTCTCCGGCGAGGCGGTAA 2015
Query 2061 TACATAAGGAGAGTTCaaaacaaaaacccaaaaaaaaaaaaaaaaaGATGATCcttcttc 2120
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||||
Sbjct 2016 TACATAAGAAGAGTTCAAAACAAAAACC-AAAAAAAAAAAAAA-----T--TC-TTCTTC 2066
Query 2121 ctcagttttcttcttcattgtcatgtaatggttcttcttcttttcttcttcttGGGGGTT 2180
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2067 CTCTGTTTTCTTCTTCATTGTCATGTAATGGTTCTTCTTCTT--CTTCTTCTTGGGGGTT 2124
Query 2181 ATGGTTAAGGTTTGTGTTTTGAGGCAGATTGTACTAGAgttttttttcatgtttcttttg 2240
||||||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 2125 ATGGTTAAGGTTTGTGTTTTGAGGCAGATTGTATTAGAGTTTTT---C-T----CTTTTG 2176
Query 2241 ttttgtcgtttttaagtccttttgttttgtttttgATAGTGTGAGATATGGAAAGAGTAT 2300
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2177 TTTTGTCGTTTT-AAGTCCTTT-GTTTTGTTTTTGATAGTGTGAGATATGGAAAGAGGAT 2234
Query 2301 TTAGCCATGTAGGGCTTTCGAGAATAAGTCTTTTTATCACTATGAGATTATTTTGTTCTC 2360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 TTAGCCATGTAGGGCTTTCGAGAATAAGTCTTTTTATCACTATGAGATTATTTTGTTCTC 2294
Query 2361 AAGCTGTTTGTATGTCTTATGCGAACGCAAGCAAACTCGTTTCTGTTGATGTACTTTTAT 2420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2295 AAGCTGTTTGTATGTCTTATGCGAACGCAAGCAAACTCGTTTCTGTTGATGTACTTCTAT 2354
Query 2421 TTTATAGAAAA 2431
|||||||||||
Sbjct 2355 TTTATAGAAAA 2365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92368844125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5