BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07820.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1 2037 0.0
Ahg478121 jgi|Araly1|478121|fgenesh2_kg.3__822__AT3G07830.1 1110 0.0
> Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1
Length=1355
Score = 2037 bits (1103), Expect = 0.0
Identities = 1280/1364 (94%), Gaps = 17/1364 (1%)
Strand=Plus/Plus
Query 10 AAAATAGAATAACAAATAGTAATATTAGTAGTAAtttttttatttttttGGGGAAAAAAT 69
|||||||||||||||||||||||| ||||| | ||||| || ||||||| ||| ||||||
Sbjct 3 AAAATAGAATAACAAATAGTAATAGTAGTAAT-ATTTTATT-TTTTTTT-GGG-AAAAAT 58
Query 70 GGGTGGATATTTTGGAGTTTCTACAATTTTTATTATCTGTTTGTTGGGAATTTCAGCCAA 129
||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 59 GGGTGCATATTTTGGAGTTTCTACCATATTAATTATCTGTTTGTTGGGAATTTCAGCCAA 118
Query 130 TGCTGAGGTATTCACCATTGGTTCTTCATCAGGTTCTGATATTACTCAGGCACTTCTGAA 189
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 119 TGCTGAGGTATTCACCATTGGTTCGTCATCAGGTTCTGATATTACTCAGGCCCTTCTGAA 178
Query 190 AGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTGATCCCAAAAGGAGA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTGATCCCAAAAGGAGA 238
Query 250 GTTCAAGCTTGGTGAGATCGAGATGAGGGGTCCATGCAAAGCTCCCATTGAGGTCACCCT 309
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 GTTCAAGCTTGGTGAGATCGAGATGAGGGGTCCATGCAAAGCTCCCGTTGAGGTCACCCT 298
Query 310 TCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGGAAGGAAAAATGGGTCGTCTT 369
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 299 TCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGAAAGGAGAAATGGGTCGTCTT 358
Query 370 CGGCAACATTGATGGCTTTAAGTTGAACGGAGGAGGAGCCTTCGACGGTGAAGGCAA-TG 428
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 359 CGGCAACATTGATGGCTTTAAGTTGAACGGAGGTGGAGCCTTCGACGGTGAAGGAAACT- 417
Query 429 CAGCTTGGAGAGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCCATCAGTA 488
| || ||||| ||||| ||||| |||||||| ||| | ||||||||||||||||||||||
Sbjct 418 CTGCGTGGAGGGTCAACAACTGCCACAAGACCTTCAACTGCAAGAAACTTCCCATCAGTA 477
Query 489 TAAGGTTTGACTTCATATTGAACTCTGAGATCAGAGACATATCCTCGATCGATGCCAAGA 548
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 TAAGGTTTGACTTCGTGTTGAACTCTGAGATCAGAGACATATCCTCGATCGATGCAAAGA 537
Query 549 ACTTCCACATCAACGTGTTGGGAGCCAAGAACATGACCATGAATAACATCAAGATCGTCG 608
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 538 ATTTCCACATCAACGTGTTGGGAGCCAAGAACATGACCATGGATAACATCAAGATCATCG 597
Query 609 CCCCAGAAGACAGTCCCAACACTGATGGAATCCATTTGGGAAGAAGTGACGGAGTCAAGA 668
| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 CTCCAGAGGAGAGTCCCAACACTGATGGGATCCATTTGGGAAGAAGTGACGGAGTCAAGA 657
Query 669 TCCTTAACTCTTTCATCTCCACCGGAGACGATTGTATCTCCGTCGGAGATGGGATGAAGA 728
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 658 TCCTTAACTCTTTCATCTCCACCGGAGACGATTGCATCTCCGTTGGAGATGGGATGAAGA 717
Query 729 ACCTTCACGTGGAGAAGGTCACATGCGGTCCGGGACACGGAATCAGTGTCGGGAGTCTTG 788
|||||||||||||||| || ||||||||||| |||||||||||||||||||| || ||||
Sbjct 718 ACCTTCACGTGGAGAAAGTTACATGCGGTCCAGGACACGGAATCAGTGTCGGAAGCCTTG 777
Query 789 GAAGGTACGGACACGAGCAAGATGTCAGCGGCATTAAGGTCATCAACTGCACTCTTCAAG 848
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 778 GAAGGTACGGACACGAGCAAGACGTCAGCGGCATTAAGATCATCAACTGCACTCTCCAAG 837
Query 849 AGACTGACAACGGGTTGAGGATCAAGACATGGCCCTCTGCAGCTTGCTCCACCACCGCAT 908
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 838 AGACTGACAACGGGTTGAGAATCAAGACATGGCCCTCTGCAGCTTGCTCCACCACCGCCT 897
Query 909 CCGATATTCATTTCGAGGATATTATCCTCAAGGACGTTAGCAACCCAATCCTCATCGACC 968
| ||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 898 CGGATATCCATTTCGAGGATATCATCGTCAAGAACGTTAGCAACCCAATCCTCATCGACC 957
Query 969 AAGAGTACTGCCCTTGGAACCAGTGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGA 1028
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGAGTACTGCCCTTGGAACCAATGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGA 1017
Query 1029 ACATTAGCTTCAAGAACATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTTT 1088
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACATAAGCTTCAAGAATATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTTT 1077
Query 1089 GCAGCAAGGGGTATCCGTGCCAGAACGTGGAGATTGGAGACATTGATATCAAGTACAATG 1148
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 GCAGCAAGGGATATCCGTGCCAGAACGTGGAGATTGGAGACATTGATATTAAGTACAATG 1137
Query 1149 GAGCAGATGGTCCAGCCACTTTCCATTGCTCAAACGTCAGTCCCAAAATCTTGGGATCTC 1208
|||| ||||||||||| |||||||| || ||||| |||||||||||| ||||||||||||
Sbjct 1138 GAGCCGATGGTCCAGCGACTTTCCAATGTTCAAATGTCAGTCCCAAACTCTTGGGATCTC 1197
Query 1209 AGAGCCCTAAAGCATGCAGCGCTCCAGCAGCCTAAATGTAGAAGCTCTAAAACAATTAAT 1268
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1198 AGAGCCCTAAAGCATGCAGCGCTCAAGCAGCCTAAATGTAGAAGCTCTAAAACAATTAAT 1257
Query 1269 TAATCAAACACTCATTCAATTCAATTTTATATATGAATTTCTTCTACACAGTAACTATAT 1328
||||||||||| |||||| || |||||||| | | ||||||||| ||| |||||||||
Sbjct 1258 TAATCAAACACCCATTCA-TT---TTTTATATGT-A-TTTCTTCTATACATTAACTATAT 1311
Query 1329 ACGATGTATGCTCTCATT-TA---A-TTCAACAATGAATGCATC 1367
|||||||||||||||| || | ||||||||||||||||||
Sbjct 1312 TTGATGTATGCTCTCATTCTATTTAATTCAACAATGAATGCATC 1355
> Ahg478121 jgi|Araly1|478121|fgenesh2_kg.3__822__AT3G07830.1
Length=1411
Score = 1110 bits (601), Expect = 0.0
Identities = 961/1134 (85%), Gaps = 27/1134 (2%)
Strand=Plus/Plus
Query 67 AATGGGTGGATATTTTGGAGTTTCTACAATTTTTATTATCTGTTTGTTGGGAATTTCAGC 126
||||||| |||||| ||| ||||||||||||| | || |||||| ||||| |||||||
Sbjct 1 AATGGGTTCATATTTCGGAATTTCTACAATTTTCGTAATATGTTTGCTGGGATTTTCAGC 60
Query 127 CAATGCTGAGGTATTCACCATTGGTTCTTCAT-CAGGTTCTGATATTACTCAGGCACTTC 185
|||||||||||| || | ||||||||||| | |||||||||||||||| ||||||||||
Sbjct 61 CAATGCTGAGGTGTTTAGAATTGGTTCTTC-TCCAGGTTCTGATATTACGCAGGCACTTC 119
Query 186 TGAAAGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTGATCCCAAAAG 245
||| |||||||||||| ||||||||| || || |||| ||||| ||||||||||||||||
Sbjct 120 TGAGAGCATTCACATCAGCATGCCAAGCTCCGACACCGAGCAAGGTGGTGATCCCAAAAG 179
Query 246 GAGAGTTCAAGCTTGGTGAGATCGA-GATGAGGGGTCCATGCAAAGCTCCCA-TTGAGGT 303
|| |||||| ||||||||||||| | ||||| ||||||||||||| || ||| | ||| |
Sbjct 180 GACAGTTCAGGCTTGGTGAGATC-ATGATGACGGGTCCATGCAAATCT-CCAGTGGAGAT 237
Query 304 CACCCTTCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGGAAGGAAAAATGGGT 363
||||| ||||| |||||| |||||||| ||| | ||||| || ||||||||||||||
Sbjct 238 AACCCTGCAAGGCACTGTCCTTGCTGACGGAAACTCGATCCATGGAAAGGAAAAATGGGT 297
Query 364 CGTCTTCGGC-AA-CATTGATGGCTTTAAGTTGAACGGAGGAGGAGCCTTCGACGGTGAA 421
||| ||| | || || ||||| |||| |||||||||||| ||| | ||||||||||||
Sbjct 298 CGTGTTC--CAAAGAATGGATGGGTTTAGGTTGAACGGAGGTGGAACTTTCGACGGTGAA 355
Query 422 GGCAATGCAGCTTGGAGAGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCC 481
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGTAACGCAGCTTGGAGGGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCC 415
Query 482 ATC--A-GTATAAGGTTTGACTTCAT-ATTGAACTCTGAGATCAGAGACATATCCTCGAT 537
||| | | ||||||||||| ||| | | |||| |||||||||||||||||||||| ||
Sbjct 416 ATCGTAAGCATAAGGTTTGATTTCGTGAC-GAACGCTGAGATCAGAGACATATCCTCAAT 474
Query 538 CGATGCCAAGAACTTCCACATCAACGTGTTGGGAGCCAAGAACATGACCATGAATAACAT 597
||||||||||||||| |||||||||||| | || ||||||||||||||| | || ||| |
Sbjct 475 CGATGCCAAGAACTTTCACATCAACGTGATAGGCGCCAAGAACATGACCTTTAACAACGT 534
Query 598 CAAGATCGTCGCCCCAGAAGACAGTCCCAACACTGATGGAATCCATTTGGGAAGAAGTGA 657
||||||| | || |||| ||| || ||||||||||| || ||||| |||||||||||||
Sbjct 535 CAAGATCATGGCTCCAGCAGAGAGCCCCAACACTGACGGGATCCACTTGGGAAGAAGTGT 594
Query 658 CGGAGTCAAGATCCTTAACTCTTTCATCTCCACCGGAGACGATTGTATCTCCGTCGGAGA 717
||| ||| ||| | |||||| ||| |||||||||| || ||| |||||||||| ||
Sbjct 595 CGGGGTCTCGATTATCAACTCTAGGATCGCCACCGGAGATGACTGTGTCTCCGTCGGGGA 654
Query 718 TGGGATGAAGAACCTTCACGTGGAGAAGGTCACATGCGGTCCGGGACACGGAATCAGTGT 777
|||||| ||| |||| |||| |||| ||| || ||||| |||||||| ||||||||
Sbjct 655 CGGGATGGTGAATCTTCTCGTGAAGAACGTCGTGTGTGGTCCTGGACACGGGATCAGTGT 714
Query 778 CGGGA-GTCTTGGAAGGTACGGACACGAGCAAGATGTCAGCGGCATTAAGGTCATCAACT 836
|||| | ||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 715 -GGGAAGCCTTGGAAGGTACGGACACGAGCAGGACGTCAGCGGCATTAGGGTCATCAACT 773
Query 837 GCACTCTTCAAGAGACTGACAACGGGTTGAGGATCAAGACATGGCCCTCTGCAGCTTGCT 896
|||| || || |||||||||||||| | ||||||||||| ||||||||||||||||| |
Sbjct 774 GCACCCTCCAGGAGACTGACAACGGCCTCAGGATCAAGACTTGGCCCTCTGCAGCTTGTT 833
Query 897 CCACCACCGCATCCGATATTCATTTCGAGGATATTATCCTCAAGGA-CGTTAGCAACCCA 955
||||||| || ||| |||||||||| ||| |||| ||||| | | | |||||| ||||||
Sbjct 834 CCACCACTGCCTCCAATATTCATTTTGAGAATATCATCCTTA-GAAACGTTAGTAACCCA 892
Query 956 ATCCTCATCGACCAAGAGTACTG-CCCTTGGAACCAGTGCAACAAGCAAAAAGCATCAAC 1014
||||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| |
Sbjct 893 ATCCTCATCGACCAAGAGTACTGTCCCT-GGAACCAGTGCAACAAGCAGAAATCATCATC 951
Query 1015 AATTAAGTTGGTGAACATTAGCTTCAAGAACATCAGAGGAACATCAGGGAACAAGGACGC 1074
|||||| ||| ||||| |||||||||| || ||||| ||||||||||||||||||||
Sbjct 952 CATTAAGCTGGCAAACATAAGCTTCAAGAGGATTAGAGGGACATCAGGGAACAAGGACGC 1011
Query 1075 GGTGAAGCTACTT-TGCAGCAAGGGGTATCCGTGCCAGAACGTGGAGATTGGAGACATTG 1133
|||||||| || ||||||||||| |||||||| ||||||| || |||||||||||
Sbjct 1012 AGTGAAGCTG-TTGTGCAGCAAGGGATATCCGTGTGAGAACGTTCAGGTTGGAGACATTA 1070
Query 1134 ATAT-CAAGTACAATGGAGCAGATGGTCCAGCCACTTTCCAT-TGCTCAAACGT 1185
|||| || ||||| |||||| |||||||||||||| ||| || |||||||||||
Sbjct 1071 ATATTCA-GTACACTGGAGCCGATGGTCCAGCCACCTTC-ATGTGCTCAAACGT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5