BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07830.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478121 jgi|Araly1|478121|fgenesh2_kg.3__822__AT3G07830.1 2191 0.0
Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1 1014 0.0
> Ahg478121 jgi|Araly1|478121|fgenesh2_kg.3__822__AT3G07830.1
Length=1411
Score = 2191 bits (1186), Expect = 0.0
Identities = 1345/1419 (95%), Gaps = 21/1419 (1%)
Strand=Plus/Plus
Query 55 aatGGGTTCATATTTTGGAATTTCTACAATTTTCGTGATATGTTTGCTGGGATTTTCAGC 114
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AATGGGTTCATATTTCGGAATTTCTACAATTTTCGTAATATGTTTGCTGGGATTTTCAGC 60
Query 115 CAATGCTCATGAGGTGCTTAGACTTACG-TCTTCTCCAGGTTCTGATATTACGCAGGCGC 173
||||| | ||||||| ||||| || | ||||||||||||||||||||||||||||| |
Sbjct 61 CAATG--C-TGAGGTGTTTAGAATT-GGTTCTTCTCCAGGTTCTGATATTACGCAGGCAC 116
Query 174 TTCTGAGAGCATTCACAACGGCATGCCAATCTCCGACACCGAGGAAGGTGGTGATCCCAA 233
||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 117 TTCTGAGAGCATTCACATCAGCATGCCAAGCTCCGACACCGAGCAAGGTGGTGATCCCAA 176
Query 234 AAGGACAGTTCAAGCTTGGTGAGATCATGATGTCGGGTCCATGCAAATCTCCAGTCGAGA 293
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 177 AAGGACAGTTCAGGCTTGGTGAGATCATGATGACGGGTCCATGCAAATCTCCAGTGGAGA 236
Query 294 TCACCTTGCTAGGCACTGTCCTCGCTGACGGAAACTCGATCCATGGAAAAGAAAAATGGG 353
| ||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 237 TAACCCTGCAAGGCACTGTCCTTGCTGACGGAAACTCGATCCATGGAAAGGAAAAATGGG 296
Query 354 TCGTGTTCCAAAGAATGGATGGGTTCAGGTTGAACGGAGGTGGAACTTTCGACGGTGAAG 413
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 TCGTGTTCCAAAGAATGGATGGGTTTAGGTTGAACGGAGGTGGAACTTTCGACGGTGAAG 356
Query 414 GTAACGCAGCTTGGAGGGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTAACGCAGCTTGGAGGGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCCA 416
Query 474 TC---AGTATAAGGTTTGATTTCGTGACGAACGCTGAGATCAGAGACATATCCTCAATCG 530
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCGTAAGCATAAGGTTTGATTTCGTGACGAACGCTGAGATCAGAGACATATCCTCAATCG 476
Query 531 ATGCCAAGAACTTTCACATCAACGTGATTGGCGCCAAGAACATGACCTTTGACAACGTCA 590
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 477 ATGCCAAGAACTTTCACATCAACGTGATAGGCGCCAAGAACATGACCTTTAACAACGTCA 536
Query 591 AGATCATGGCTCCAGCAGAGAGCCCCAACACTGACGGGATCCACTTGGGAAGAAGTGTCG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGATCATGGCTCCAGCAGAGAGCCCCAACACTGACGGGATCCACTTGGGAAGAAGTGTCG 596
Query 651 GGGTCTCCATTATCAACTCTAGGATCTCCACCGGAGATGACTGTGTCTCTGTCGGGGACG 710
||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 597 GGGTCTCGATTATCAACTCTAGGATCGCCACCGGAGATGACTGTGTCTCCGTCGGGGACG 656
Query 711 GGATGGTGAATCTTCTAGTTAAGAACGTCGTGTGTGGTCCTGGACACGGGATCAGTGTTG 770
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 657 GGATGGTGAATCTTCTCGTGAAGAACGTCGTGTGTGGTCCTGGACACGGGATCAGTGTGG 716
Query 771 GAAGCCTTGGAAGGTACGGACATGAACAGGACGTCAGCGGCATTAGGGTCATCAATTGCA 830
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 717 GAAGCCTTGGAAGGTACGGACACGAGCAGGACGTCAGCGGCATTAGGGTCATCAACTGCA 776
Query 831 CCCTCCAGGAGACTGACAATGGCCTCAGGATCAAGACTTGGCCCTCTGCAGCTTGCTCCA 890
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 CCCTCCAGGAGACTGACAACGGCCTCAGGATCAAGACTTGGCCCTCTGCAGCTTGTTCCA 836
Query 891 CCACTGCCTCCAATATTCATTTTGAGAATATCATCCTTAGAAACGTTAGTAACCCAATCC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCACTGCCTCCAATATTCATTTTGAGAATATCATCCTTAGAAACGTTAGTAACCCAATCC 896
Query 951 TCATCGACCAAGAGTACTGTCCTTGGAACCAGTGCAACAAGCAGAAATCATCATCCATTA 1010
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 TCATCGACCAAGAGTACTGTCCCTGGAACCAGTGCAACAAGCAGAAATCATCATCCATTA 956
Query 1011 AGCTGGCAAACATAAGCTTCAGGAGGATTAGAGGGACATCAGGGAACAAAGACGCAGTGA 1070
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 957 AGCTGGCAAACATAAGCTTCAAGAGGATTAGAGGGACATCAGGGAACAAGGACGCAGTGA 1016
Query 1071 AGCTATTGTGCAGCAAGGGATATCCGTGTGAGAACGTTCAGGTTGGAGACATTAATATTC 1130
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCTGTTGTGCAGCAAGGGATATCCGTGTGAGAACGTTCAGGTTGGAGACATTAATATTC 1076
Query 1131 AGTACACTGGAGCCGATGGTCCAGCCACCTTCATGTGCTCAAACGTAAGGCCTAAGCTAG 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 AGTACACTGGAGCCGATGGTCCAGCCACCTTCATGTGCTCAAACGTAAGGCCTAAGCTTG 1136
Query 1191 TTGGAACTCAGTTCCCAAAGGCTTGTAACACACCACCCGTGCTGACCCAACCTAAGTAAA 1250
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1137 TTGGAACTCAGTTCCCAAAGGCTTGTAACACACCACCCGTGTTGACCCAACCTAAGTAAA 1196
Query 1251 ATGTAGAAAGTTCTCAT-AACATTTAGGAATTTCTCATCCATTTTTTCTTCAATCTTAG- 1308
|||||||||| || || || |||||||||||||||||||| |||||||||||||||||
Sbjct 1197 ATGTAGAAAGCTCACAACAATATTTAGGAATTTCTCATCCAATTTTTCTTCAATCTTAGA 1256
Query 1309 TTTTT-CCCAATGTCACACAAGGGAGATTTCTTTTATTTAAAAA-CTGTAAAAGAATTTT 1366
||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1257 TTTTTTCCCAAAGTCACACAAGGGAGATTTA----ATTTAAAAAGCTGTAAAAGAATTTT 1312
Query 1367 GTTTCACTTTTTATTTGTTT-----GATGCCAACACAAATACATAGATGTGTGTGCGCAT 1421
|||||||||||| ||| ||| |||||||||||| ||||||||||||||||| ||||
Sbjct 1313 GTTTCACTTTTTTTTTTTTTTATTTGATGCCAACACATATACATAGATGTGTGTGTGCAT 1372
Query 1422 ATATGAATGCAATAAAACTAAAAAGATGCAGGTTATTTT 1460
|||||||||||||||||| |||||||| ||||||| |||
Sbjct 1373 ATATGAATGCAATAAAACCAAAAAGATACAGGTTAATTT 1411
> Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1
Length=1355
Score = 1014 bits (549), Expect = 0.0
Identities = 975/1178 (83%), Gaps = 39/1178 (3%)
Strand=Plus/Plus
Query 51 aaataatGGGTTCATATTTTGGAATTTCTACAATTTTCGTGATATGTTTGCTGGGATTTT 110
||| ||||||| ||||||||||| ||||||| || || | || |||||| ||||| |||
Sbjct 53 AAA-AATGGGTGCATATTTTGGAGTTTCTACCATATTAATTATCTGTTTGTTGGGAATTT 111
Query 111 CAGCCAATGCTCATGAGGTGCTTAGA-C-TTACG-TCTTC-TCCAGGTTCTGATATTACG 166
||||||||| | |||||| || | | || | || || | ||||||||||||||||
Sbjct 112 CAGCCAATG--C-TGAGGT-ATT-CACCATT-GGTTCGTCAT-CAGGTTCTGATATTACT 164
Query 167 CAGGCGCTTCTGAGAGCATTCACAACGGCATGCCAATCTCCGACACCGAGGAAGGTGGTG 226
||||| ||||||| |||||||||| |||||||||||||| || |||| || || ||||||
Sbjct 165 CAGGCCCTTCTGAAAGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTG 224
Query 227 ATCCCAAAAGGACAGTTCAAGCTTGGTGAGATC-ATGATGTCGGGTCCATGCAAATCTCC 285
|||||||||||| |||||||||||||||||||| | |||| ||||||||||||| ||||
Sbjct 225 ATCCCAAAAGGAGAGTTCAAGCTTGGTGAGATCGA-GATGAGGGGTCCATGCAAAGCTCC 283
Query 286 AGTCGAGATCA-CCTTGCTAGGCACTGTCCTCGCTGACGGAAACTCGATCCATGGAAAAG 344
|| ||| ||| |||| | ||| |||||| |||||||| ||| | ||||| ||||| |
Sbjct 284 CGTTGAGGTCACCCTT-CAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGAAAGG 342
Query 345 AAAAATGGGTCGTGTTC--CAAAGAATGGATGGGTTCAGGTTGAACGGAGGTGGAACTTT 402
| ||||||||||| ||| | || || ||||| || | |||||||||||||||| | ||
Sbjct 343 AGAAATGGGTCGTCTTCGGC-AA-CATTGATGGCTTTAAGTTGAACGGAGGTGGAGCCTT 400
Query 403 CGACGGTGAAGGTAACGCAGCTTGGAGGGTCAATAACTGTCACAAGACTTTCGAGTGCAA 462
|||||||||||| ||| | || ||||||||||| ||||| |||||||| ||| | |||||
Sbjct 401 CGACGGTGAAGGAAACTCTGCGTGGAGGGTCAACAACTGCCACAAGACCTTCAACTGCAA 460
Query 463 GAAACTTCCCATCAGTATAAGGTTTGATTTCGTGACGAACGCTGAGATCAGAGACATATC 522
||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 461 GAAACTTCCCATCAGTATAAGGTTTGACTTCGTGTTGAACTCTGAGATCAGAGACATATC 520
Query 523 CTCAATCGATGCCAAGAACTTTC-ACATCAACGTGATTGGC-GCCAAGAACATGACCTTT 580
||| |||||||| ||||| |||| ||||||||||| |||| ||||||||||||||| |
Sbjct 521 CTCGATCGATGCAAAGAA-TTTCCACATCAACGTG-TTGGGAGCCAAGAACATGACCATG 578
Query 581 GACAACGTCAAGATCATGGCTCCAGCAG-AGAGCCCCAACACTGACGGGATCCACTTGGG 639
|| ||| |||||||||| ||||||| || |||| ||||||||||| |||||||| |||||
Sbjct 579 GATAACATCAAGATCATCGCTCCAG-AGGAGAGTCCCAACACTGATGGGATCCATTTGGG 637
Query 640 AAGAAGTGTCGGGGTCTCCATTATCAACTCTAGGATCTCCACCGGAGATGACTGTGTCTC 699
|||||||| ||| ||| || | |||||| |||||||||||||| || || ||||
Sbjct 638 AAGAAGTGACGGAGTCAAGATCCTTAACTCTTTCATCTCCACCGGAGACGATTGCATCTC 697
Query 700 TGTCGGGGACGGGATGGTGAATCTTCTA-GTTAAGAACGTCGTGTGTGGTCCTGGACACG 758
|| || || |||||| ||| |||| | || |||| || || ||||| |||||||
Sbjct 698 CGTTGGAGATGGGATGAAGAACCTTC-ACGTGGAGAAAGTTACATGCGGTCCAGGACACG 756
Query 759 GGATCAGTGTTGGAAGCCTTGGAAGGTACGGACATGAACAGGACGTCAGCGGCATTAGGG 818
| |||||||| ||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 757 GAATCAGTGTCGGAAGCCTTGGAAGGTACGGACACGAGCAAGACGTCAGCGGCATTAAGA 816
Query 819 TCATCAATTGCACCCTCCAGGAGACTGACAATGGCCTCAGGATCAAGACTTGGCCCTCTG 878
||||||| ||||| ||||| ||||||||||| || | || |||||||| ||||||||||
Sbjct 817 TCATCAACTGCACTCTCCAAGAGACTGACAACGGGTTGAGAATCAAGACATGGCCCTCTG 876
Query 879 CAGCTTGCTCCACCACTGCCTCCAATATTCATTTTGAGAATATCATCCTTA-GAAACGTT 937
|||||||||||||||| ||||| |||| ||||| ||| |||||||| | | ||| ||||
Sbjct 877 CAGCTTGCTCCACCACCGCCTCGGATATCCATTTCGAGGATATCATCGTCAAGAA-CGTT 935
Query 938 AGTAACCCAATCCTCATCGACCAAGAGTACTGTCCTTGGAACCAGTGCAACAAGCAGAAA 997
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 936 AGCAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGGAACCAATGCAACAAGCAAAAA 995
Query 998 TCATCATCCATTAAGCTGGCAAACATAAGCTTCAGGAGGATTAGAGGGACATCAGGGAAC 1057
||||| | |||||| ||| ||||||||||||| || || ||||| ||||||||||||
Sbjct 996 GCATCAACAATTAAGTTGGTGAACATAAGCTTCAAGAATATCAGAGGAACATCAGGGAAC 1055
Query 1058 AAAGACGCAGTGAAGCTA-TTGTGCAGCAAGGGATATCCGTGTGAGAACGTTCAGGTTGG 1116
|| ||||| ||||||||| || |||||||||||||||||||| ||||||| || ||||
Sbjct 1056 AAGGACGCGGTGAAGCTACTT-TGCAGCAAGGGATATCCGTGCCAGAACGTGGAGATTGG 1114
Query 1117 AGACATTAATATTCAGTACACTGGAGCCGATGGTCCAGCCACCTTC-A-TGTGCTCAAAC 1174
||||||| ||||| |||||| |||||||||||||||||| || ||| | ||| |||||
Sbjct 1115 AGACATTGATATTAAGTACAATGGAGCCGATGGTCCAGCGACTTTCCAATGT--TCAAAT 1172
Query 1175 GTAAGGCCTAAGCTAGTTGGAA-CTCAGTTCCC-AAAG 1210
|| || || || || |||| | ||||| ||| ||||
Sbjct 1173 GTCAGTCCCAAACTC-TTGGGATCTCAGAGCCCTAAAG 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5