BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07860.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478124 jgi|Araly1|478124|fgenesh2_kg.3__825__AT3G07860.1 955 0.0
Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324 113 2e-24
> Ahg478124 jgi|Araly1|478124|fgenesh2_kg.3__825__AT3G07860.1
Length=711
Score = 955 bits (517), Expect = 0.0
Identities = 604/645 (94%), Gaps = 10/645 (2%)
Strand=Plus/Plus
Query 1 CCTAAACCCTACGGAATGGAGAGCGGCGATTACGATGTTGAGACGAAAAGAGAGAAGCTT 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CCTAAACCCTAGGGAATGGAGAGCGGCGATTACGACGTTGAGACGAAAAGAGAGAAGCTT 60
Query 61 AAATCGGTTCTCTCTCAGCTCCTTGCTGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 AAATCGGTTCTCTCTCATCTCCTCGCCGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120
Query 121 ACACTTTCTGATGTCGTCACTCTTGTCAGCCTTGAGAAGGGAAGCGCTATGCGTCTCTCC 180
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 121 ACACTCTCTGATGTCGTCACTCTTGTCAGTCTTGAAAAGGGAAGCGCTATGCGTCTCTCC 180
Query 181 GTCGTCAAGCTCGACGGCTCCTCCCTTGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GTCGTCAAGCTCGACGGCTCCTCCCTGGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240
Query 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAATGGAGCAAGCAAACATGGGTCAT 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAACGGAGCAAGCAAACATGGGTCAT 300
Query 301 CGCCATATTTCTTGGAAGCATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCACATTTCTTGGAAACATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360
Query 361 TTGCTTGACGATAATGCTGTTCTTCAGGATGTTGGAATCCGGAACAATTCTCAGGTGACT 420
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 361 TTGCTTGACGATAATGCTCTTCTTCAAGATGTAGGAATCCGGAACAATTCTCAGGTGACC 420
Query 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAGCATCGT 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAGCATCGT 480
Query 481 CTCTTTCGTTCTCTCCACAAGACTTCTTCTTGAAGCCTTTTTATAAT-TTGGTTGGAGTG 539
||||||||||| |||||||||||||||||||||| |||||| ||| | ||||| |||
Sbjct 481 CTCTTTCGTTCACTCCACAAGACTTCTTCTTGAATCCTTTT-ATA-TGTTGGTA--AGTT 536
Query 540 GACAAA-GTC--GTCTCAGCACGGATGAAATCAAAACTAACAGATTCCGTCTGTGGTTTA 596
|||| ||| ||||||||| ||||||||||||| |||| ||||| ||||||||||| |
Sbjct 537 GACAGTCGTCTCGTCTCAGCATGGATGAAATCAAA-CTAATAGATTACGTCTGTGGTT-A 594
Query 597 TCCCACCTTGGAATACACCAGCAGCACAACACGCAGCAGCAACTA 641
| |||||| |||| |||||||||||||||||||||||| |||||
Sbjct 595 TTGCACCTTAGAATTCACCAGCAGCACAACACGCAGCAGAAACTA 639
> Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324
Length=552
Score = 113 bits (61), Expect = 2e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 415 GTGACTTTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAG 474
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 362 GTGACCTTCATGTCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAG 421
Query 475 CATCGTCTCT 484
||||||||||
Sbjct 422 CATCGTCTCT 431
Score = 99.0 bits (53), Expect = 5e-20
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 208 GATGTGGCGGTCATGAATTCAGCTACTTTGAAAGATCT-GAAGCTTTTGATCAAGAAGAA 266
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 302 GATGTTGCGGTCATGAATTCAGCTACTTTGAAAGA-CTTGAAGCTTTTGATCAAGAAGAA 360
Query 267 AGT 269
|||
Sbjct 361 AGT 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5