BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07860.1 Length=884 Score E Sequences producing significant alignments: (Bits) Value Ahg478124 jgi|Araly1|478124|fgenesh2_kg.3__825__AT3G07860.1 955 0.0 Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324 113 2e-24 > Ahg478124 jgi|Araly1|478124|fgenesh2_kg.3__825__AT3G07860.1 Length=711 Score = 955 bits (517), Expect = 0.0 Identities = 604/645 (94%), Gaps = 10/645 (2%) Strand=Plus/Plus Query 1 CCTAAACCCTACGGAATGGAGAGCGGCGATTACGATGTTGAGACGAAAAGAGAGAAGCTT 60 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 CCTAAACCCTAGGGAATGGAGAGCGGCGATTACGACGTTGAGACGAAAAGAGAGAAGCTT 60 Query 61 AAATCGGTTCTCTCTCAGCTCCTTGCTGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 61 AAATCGGTTCTCTCTCATCTCCTCGCCGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120 Query 121 ACACTTTCTGATGTCGTCACTCTTGTCAGCCTTGAGAAGGGAAGCGCTATGCGTCTCTCC 180 ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 121 ACACTCTCTGATGTCGTCACTCTTGTCAGTCTTGAAAAGGGAAGCGCTATGCGTCTCTCC 180 Query 181 GTCGTCAAGCTCGACGGCTCCTCCCTTGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GTCGTCAAGCTCGACGGCTCCTCCCTGGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240 Query 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAATGGAGCAAGCAAACATGGGTCAT 300 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAACGGAGCAAGCAAACATGGGTCAT 300 Query 301 CGCCATATTTCTTGGAAGCATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGCCACATTTCTTGGAAACATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360 Query 361 TTGCTTGACGATAATGCTGTTCTTCAGGATGTTGGAATCCGGAACAATTCTCAGGTGACT 420 |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 361 TTGCTTGACGATAATGCTCTTCTTCAAGATGTAGGAATCCGGAACAATTCTCAGGTGACC 420 Query 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAGCATCGT 480 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAGCATCGT 480 Query 481 CTCTTTCGTTCTCTCCACAAGACTTCTTCTTGAAGCCTTTTTATAAT-TTGGTTGGAGTG 539 ||||||||||| |||||||||||||||||||||| |||||| ||| | ||||| ||| Sbjct 481 CTCTTTCGTTCACTCCACAAGACTTCTTCTTGAATCCTTTT-ATA-TGTTGGTA--AGTT 536 Query 540 GACAAA-GTC--GTCTCAGCACGGATGAAATCAAAACTAACAGATTCCGTCTGTGGTTTA 596 |||| ||| ||||||||| ||||||||||||| |||| ||||| ||||||||||| | Sbjct 537 GACAGTCGTCTCGTCTCAGCATGGATGAAATCAAA-CTAATAGATTACGTCTGTGGTT-A 594 Query 597 TCCCACCTTGGAATACACCAGCAGCACAACACGCAGCAGCAACTA 641 | |||||| |||| |||||||||||||||||||||||| ||||| Sbjct 595 TTGCACCTTAGAATTCACCAGCAGCACAACACGCAGCAGAAACTA 639 > Ahg335759 jgi|Araly1|335759|fgenesh1_pg.C_scaffold_1002324 Length=552 Score = 113 bits (61), Expect = 2e-24 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 415 GTGACTTTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAG 474 ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 362 GTGACCTTCATGTCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAG 421 Query 475 CATCGTCTCT 484 |||||||||| Sbjct 422 CATCGTCTCT 431 Score = 99.0 bits (53), Expect = 5e-20 Identities = 60/63 (95%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 208 GATGTGGCGGTCATGAATTCAGCTACTTTGAAAGATCT-GAAGCTTTTGATCAAGAAGAA 266 ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 302 GATGTTGCGGTCATGAATTCAGCTACTTTGAAAGA-CTTGAAGCTTTTGATCAAGAAGAA 360 Query 267 AGT 269 ||| Sbjct 361 AGT 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32747585703 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5