BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07870.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478125 jgi|Araly1|478125|fgenesh2_kg.3__826__AT3G07870.1 2420 0.0
> Ahg478125 jgi|Araly1|478125|fgenesh2_kg.3__826__AT3G07870.1
Length=1542
Score = 2420 bits (1310), Expect = 0.0
Identities = 1460/1531 (95%), Gaps = 16/1531 (1%)
Strand=Plus/Plus
Query 15 tcttcttcttcttctt-ctcctctctctctctccatctcgatatcaaaaactcttgcttc 73
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 6 TCTTCTTCTTCTTCTTCCTCTTCTCTCTCTCTCCATCTCGAGATCAAAAACTCTTGCTTC 65
Query 74 tgattctcttcATTCATGGCTTCAGAGAAGAGTTTCAAGAAGAGAAAGATCACCGATGAT 133
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 TGATTCTCTTCATTCATGGCCTCAGAGAAGAGTTTCAAGAAGAGAAAGATCACCGATGAT 125
Query 134 GTAGACGGAGTAGGAGTAGGAGGAGGACTAGAATCCCTTCCCGAAGATATCATCGCCGAC 193
|||||| | | ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 126 GTAGAC-G-G-AGGAGGAGGAGGAGGACTAGAATCCCTTCCCGGAGATATCATCGCCGAC 182
Query 194 ATATTCTCTCGCCTACCAATCTCCTCCATAGCTCGGCTTATGTTCGTTTGCAGATCTTGG 253
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATATTCTCTCGGCTACCAATCTCCTCCATAGCTCGGCTTATGTTCGTTTGCAGATCTTGG 242
Query 254 AGATCTGTTTTGACTCAACACGGTCGtctctcttcttcttcttcttcCCCGACAAAGCCA 313
||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 243 AGATCAATTTTGACTCAACACGGTCG--TGTC-TCTTCTTCTTCTTCCCCGACAAAGCCA 299
Query 314 TGTCTTCTCCTTCACTGCGATTCGCCAATACGCAACGGTCTTCACTTCCTCGACCTATCA 373
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 300 TGTCTTCTCCTTCACTGCGATTCCCCAATACGCAACGGTCTTCACTTCCTCGACTTATCA 359
Query 374 GAAGAAGAGAAACGCATCAAGACCAAGAAATTCACATTAAGATTCGCATCTTCCATGCCG 433
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 GAAGAAGAGAAACGCATCAAGACCAAGAAATTCACATTAAGATTCGAATCTTCCATGCCG 419
Query 434 GAGTTTGACGTGGTAGGCTCTTGTAACGGTTTGCTCTGTTTGTCTGATTCTCTCTACAAC 493
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGTTCGACGTGGTAGGATCTTGTAACGGTTTGCTCTGTTTGTCTGATTCTCTCTACAAC 479
Query 494 GATTCACTCTACCTTTACAATCCTTTTACTACAAACTCCTTAGAGCTTCCCGAATGTTCC 553
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GATTCACTCTACCTCTACAATCCTTTTACTACAAACTCCTTAGAGCTCCCCGAATGTTCC 539
Query 554 AACAAGTACCACGACCAAGAACTTGTCTTCGGTTTTGGATTCCATGAGATGACAAAGGAA 613
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 540 AACAAGTACCACGACCAAGAACTTGTGTTCGGTTTCGGATTCCATGAGATGACAAAAGAA 599
Query 614 TACAAAGTTTTGAAGATAGTTTACTTCAGAGGTAGTAGTAGTAACAATAACGGTATTTAC 673
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TACAAAGTGTTGAAGATAGTTTACTTCAGAGGTAGTAGTAGTAGCAATAACGGTATTTAC 659
Query 674 AGAGGTCGTGGTAGAATCCAGTACAAGCAATCAGAGGTTCAGATCTTAACCTTGTCATCA 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAGGTCGTGGTAGAATCCAGTACAAGCAATCAGAGGTTCAGATCTTAACCTTGTCATCT 719
Query 734 AAAACAACAGATCAATCTTTGTCCTGGAGAAGCTTAGGCAAAGCTCCTTATAAGTTTGTG 793
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAACAACAGATCAATCTTTGTCTTGGAGAAGCTTAGGCAAAGCTCCTTATAAGTTTGTG 779
Query 794 AAACGTTCATCGGAGGCTTTGGTCAACGGGAGGTTACATTTTGTGACAAGGCCTCGTAGG 853
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAACGTTCGTCGGAGGCTTTGGTCAACGGGAGGTTACATTTTGTGACAAGGCCTCGTAGG 839
Query 854 CACGTGCCGGATCGTAAGTTTGTATCATTTGATCTTGAAGATGAAGAGTTTAAAGAGATT 913
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 840 CACGTGCCGGATCGTAAGTTCGTGTCTTTTGATCTTGAAGATGAAGAGTTTAAAGAGATT 899
Query 914 CCTAAACCAGACTGTGGTGGTCTAAACCGGACCAACCATAGACTAGTGAACCTTAAAGGG 973
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 900 CCTAAACCAGACTGCGGTGGGCTAAACCGGACAAACCATAGACTAGTGAACCTTAAAGGG 959
Query 974 TGTCTTTGCGCGGTCGTTTATGGTAACTATGGAAAATTAGACATATGGGTTATGAAGACT 1033
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TGTCTTTGTGCAGTCGTTTATGGTAACTATGGAAAATTAGACATATGGGTGATGAAGACT 1019
Query 1034 TATGGAGTCAAAGAATCATGGGGAAAAGAGTATAGCATTGGGACTTACTTGCCAAAGGGG 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 TATGGAGTCAAAGAATCATGGGGAAAAGAGTATAGCATTGGGACTTACTTGCCGAAGGGG 1079
Query 1094 CTAAAGCAAAATCTGGACCGACCAATGTGGATTTGGAAGAACGCTGAGAATGGTAAAGTG 1153
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTAAAGCAGAATCTGGACCGACCCATGTGGATTTGGAAGAACGCTGAGAATGGTAAAGTG 1139
Query 1154 GTTCGGGTTTTATGTTTGTTGGAGAATGGAGAGATCTTGTTGGAGTATAAGAGTAGGGTT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTCGGGTTTTATGTTTGTTGGAGAATGGAGAGATCTTGTTGGAGTATAAGAGTAGGGTT 1199
Query 1214 CTTGTGGCATATGATCCAAAATTGGGTAAATTTAAAGATCTTCTTTTCCATGGGTTGCCT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 CTTGTGGCATATGATCCAAAATTGGGTAAATTTAAAGATCTTCTTTTCCATGGTTTGCCT 1259
Query 1274 AATTGGTTTCACACTGTTGTTCATGCTGGAACATTGTCTTGGTTTGATACACCCCTTGAT 1333
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 AATTGGTTTCACACTGTTGTCCATGTTGGAACATTGTCTTGGTTTGATACACCCCTTGAT 1319
Query 1334 TTATGGTAAAATAATTAAAGTTTTGAATTTTTATTACATTTAGAGTTTTGAGATTTGGGT 1393
|||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 1320 TTATGGTAAATTAAATAAAGTTTTCAAATTTTATTACATTTAGAGTTTTGAGAAATGGGT 1379
Query 1394 ACATCTTCTTGCCCCCTTTACATACCAACTAAGTACATTCTTTTGTACGTAATGGGTAGA 1453
||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||
Sbjct 1380 ACATCTTCTTGCCCCCTTTCCATACCAACTAAGTTCATTCTTTTTT---TAATGGGTAGA 1436
Query 1454 TTAAGGTGTATTTCTTTTCAAGTTCTT----GTTTCGTTTCTGTTGAATTTATAGGTTCC 1509
||||| ||||||||||||| ||||||| |||||||||||||| ||||||| |||||
Sbjct 1437 TTAAGTTGTATTTCTTTTCGAGTTCTTAATTGTTTCGTTTCTGTTCAATTTATGGGTTCT 1496
Query 1510 TTTTCATGTCTTC-GGT-AAATGTAAATATA 1538
|||||||| | || ||| |||||||||||||
Sbjct 1497 TTTTCATGCCATCTGGTTAAATGTAAATATA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5