BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07880.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928472 jgi|Araly1|928472|scaffold_300929.1 1188 0.0
> Ahg928472 jgi|Araly1|928472|scaffold_300929.1
Length=766
Score = 1188 bits (643), Expect = 0.0
Identities = 728/767 (95%), Gaps = 13/767 (2%)
Strand=Plus/Plus
Query 186 AGGGCGAGAGA-GCTGATTGATGTCTTTGGTATCTGGAGCCAGGGACATGGGGTTCGACG 244
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AGGGCGAGCGAGGCTGATTGATGTCTTTGGTATCTGGAACCAGGGACATGGGGTTCGACG 60
Query 245 acaacaacaacaacaagaacaacaaGGATGGAGATGATGAGAACTCCTCCTCCAGAA-C- 302
|||||||||||||| ||||||||||| || |||||||| |||||||||||||||| |
Sbjct 61 ACAACAACAACAAC---AACAACAAGGACGGGGATGATGAAAACTCCTCCTCCAGAACCA 117
Query 303 --A--AGAGCCGACGACGATGCTCTTAG-TCGACAGATGAGCGAATCTTCTCTTTGTGCT 357
| ||| ||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 118 GAACCAGAACCGACGACGATGCTC-TCGCTAGACAGATGAGCGAATCTTCTCTTTGTGCT 176
Query 358 ACCGAGGAGGAAGAAGACGACGATTCCAAATTGCAATTGGGTCCTCAGTACACTATCAAA 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACCGAGGAAGAAGAAGACGACGATTCCAAATTGCAATTGGGTCCTCAGTACACTATCAAA 236
Query 418 GAACATCTCGAGAAGGACAAGGATGATGAGAGTCTGAGGAAATGGAAGGAACAGCTTCTC 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAACATCTCGAGAAGGACAAGGATGATGAGAGTCTGAGGAAATGGAAGGAACAGCTTCTG 296
Query 478 GGAAGTGTTGATGTCACCAACATTGGAGAGACTCTTGATCCGGAAGTGAGGATTGATAGC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 GGAAGTGTTGATGTCACCAACATTGGAGAGACTCTTGATCCGGAAGTGAGGATTCTTAGC 356
Query 538 CTCGCCATCATATCTCCTGGAAGACCCGACATTGTTCTCTTGGTTCCTGAGAATGGAAAT 597
||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 357 CTCGCTATCTTATCTCCTGGAAGACCCGATATTGTTCTGTTAGTTCCGGAGAATGGAAAT 416
Query 598 CCAAAGGGCATGTGGTTTACTTTGAAAGAAGGGAGCAAGTACAACTTGAAATTCACTTTT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 CCAAAGGGCATGTGGTTTACTTTGAAAGAAGGGAGCAAGTACAACTTGAAATTCACCTTT 476
Query 658 CATGTTAACAACAACATTGTCTCTGGTCTTAGGTACACCAATACAGTTTGGAAGACCGGT 717
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 477 CAAGTTAACAACAACATTGTCTCTGGTCTTAGGTACACCAATACTGTCTGGAAGACCGGT 536
Query 718 GTCAAAGTGGACAGAGCTAAGGAAATGCTTGGAACCTTTAGTCCTCAGTTGGAGCCATAC 777
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 GTTAAAGTGGACAGAGCAAAGGAAATGCTTGGAACCTTTAGTCCTCAATTGGAGCCATAC 596
Query 778 AACCACGTGATGCCAGAAGAGACCACTCCTTCTGGCATGTTTGCTCGAGGATCATATTCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACCACGTGATGCCAGAAGAGACCACTCCTTCTGGCATGTTTGCTCGAGGATCATATTCT 656
Query 838 GCAAGAACTAAGTTTCTTGATGATGATAATAAGTGCTACTTGGAGATCAACTACAGCTTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCAAGAACTAAGTTTCTTGATGATGATAATAAGTGCTACTTGGAGATCAACTACAGCTTT 716
Query 898 GACATCCGTAAAGAATGGCCTGCGCTTTGAAACTCGGAGAATGCGAG 944
|||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 717 GACATCCGTAAAGAATGGCCTGCGGTTTGAAACTCG-AGAATGCGAG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5