BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07890.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928473 jgi|Araly1|928473|scaffold_300930.1 2006 0.0
> Ahg928473 jgi|Araly1|928473|scaffold_300930.1
Length=1244
Score = 2006 bits (1086), Expect = 0.0
Identities = 1181/1228 (96%), Gaps = 1/1228 (0%)
Strand=Plus/Plus
Query 292 CGGAGGATGTTTGGGATCCAAAGCAGACGTGATTTAACGATGGAGCTACAATCTCAGATT 351
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 15 CGGAGGATGTTTGGGATCCAAAGCAGACGTGATTTGACGATGGAGCTACAATCTCAGATT 74
Query 352 CCGATTCTCCGTCCAAGCATCCACGCAAGACGAGCCAACATCGTCGTTAAATTCCAGGAC 411
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 75 CCGATTCTCCGTCCAAGCATCCACGCCAGACGAGCCAACATCGTCGTGAAATTCCAGGAC 134
Query 412 TTGTACGGGTTCACGGTGGAAGGAAATGTCGACGACGTTAATGTGTTGAACGAGGTTAGA 471
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 135 TTGTACGGTTTCACGGTGGAAGGAAATGTCGACGACGTCAATGTGTTGAACGAAGTTAGA 194
Query 472 GAGAAAGTCAGGAATCAAGGACGAGTTTGGTGGGCTCTTGAAGCTAGCAAAGGAGCTAAT 531
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 GAGAAAGTCAGGAACCAAGGACGGGTTTGGTGGGCTCTTGAAGCTAGCAAAGGAGCTAAT 254
Query 532 TGGTATCTTCAGCCGGAGATTCTCTTGATCGGTGACGGTATCGCTTTGAAAACTTCTCTC 591
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 255 TGGTATCTTCAACCGGAGATTCTCTTGATCGGTGACGGAATCGCTTTGAAAACGTCTCTC 314
Query 592 AAGCTCTCCACTTTGACTAATGCGATTACGTTGAAGAGATTGATTCGGAAAGGGATCCCT 651
||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 315 AAGATCTCGACTTTGACGAATGCGATTACCTTGAAGAGATTGATTCGGAAAGGGATCCCA 374
Query 652 CCTGTGCTTAGACCTAAGGTTTGGTTTTCTCTTTCTGGTGCTGCTAAGAAGAAATCCACC 711
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 375 CCTGTGCTTAGGCCTAAGGTTTGGTTTTCTCTTTCTGGTGCTGCCAAGAAGAAGTCCACC 434
Query 712 GTCCCAGAGAGTTATTATAGTGATTTGACCAAAGCCGTCGAAGGGATGGTCACGCCGGCT 771
||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 435 GTCCCGGATAGTTATTACAGTGATTTGACCAAAGCCGTCGATGGGAAGGTCACGCCGGCT 494
Query 772 ACGAGGCAGATTGATCATGATCTGCCACGTACTTTCCCAGGCCATCCATGGTTGGACACT 831
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 495 ACGAGGCAGATTGATCATGATCTGCCACGCACTTTCCCTGGCCATCCATGGTTGGACACT 554
Query 832 CCAGAAGGTCATGCTGCTCTACGACGTGTGCTTGTTGGGTATTCCTTTCGTGATTCAGAT 891
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 555 CCAGAGGGTCATGCTGCTCTACGGCGTGTGCTTGTTGGGTATTCCTTTCGCGATTCAGAT 614
Query 892 GTTGGCTATTGTCAGGGTCTAAACTACGTTGCAGCGTTACTATTACTTGTCATGAAGACA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTTGGCTATTGTCAGGGTCTAAACTACGTTGCAGCGTTACTATTACTTGTCATGAAGACA 674
Query 952 GAAGAAGACGCATTCTGGATGCTAGCGGTCCTTTTGGAAAACGTATTAGTCCGTGATTGT 1011
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 675 GAAGAAGACGCATTCTGGATGCTAGCAGTCCTTTTGGAAAACGTATTAGTTCGTGACTGT 734
Query 1012 TACACAACCAACTTATCTGGATGTCATGTTGAGCAGCGGGTTTTCAAAGATTTGCTTGCC 1071
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 735 TACACAACCAACTTGTCTGGATGCCATGTTGAGCAGCGGGTCTTCAAAGATTTGCTTGCC 794
Query 1072 CAAAAATGTTCTCGAATAGCTACTCATCTTGAAGATATGGGCTTTGATGTTTCCCTTGTA 1131
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CAAAAATGTCCTCGAATAGCTACTCATCTTGAAGATATGGGCTTTGATGTTTCCCTTGTA 854
Query 1132 GCCACTGAATGGTTTCTATGCCTCTTCTCTAAAAGCCTTCCTTCAGAGACAACTCTAAGG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GCCACTGAATGGTTTCTATGCCTCTTCTCTAAAAGCCTTCCTTCAGAGACAACTCTAAGG 914
Query 1192 GTGTGGGATGTACTTTTCTATGAAGGAGCGAAGGTTCTATTCCATGCAGCTTTAGCAATA 1251
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 915 GTGTGGGATGTACTTTTCTATGAAGGAGCAAAGGTTCTATTCCATGCAGCGTTAGCAATA 974
Query 1252 TTCAAGATGAAAGAGAACGAGCTGCTTATGACCCACCAGGTCGGCGATGTTATCAACATA 1311
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 975 TTCAAGATGAAAGAGAACGAGCTGCTTATGACCCACCAGGTCGGGGATGTTATCAACATA 1034
Query 1312 TTACAGAAAACTTCACACCAGCTTTTTGACCCGGATGAATTATTAACGGTGGCATTTGAG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTACAGAAAACTTCACACCAGCTTTTTGACCCGGATGAATTATTAACGGTGGCATTTGAG 1094
Query 1372 AAAATCGGATCAATGACTACCAACACGATATCAAAGCAGAGGAAGAAGCAGGAACCAGCA 1431
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1095 AAAATCGGATCGATGACTACCAACACCATATCAAAGCAGAGGAAGAAGCAGGAACCAGCC 1154
Query 1432 GTGATGGCAGAACTTGACCAGAGACTTCGGAGACTTAACTCTCTTAAAGAAAGTGGGAAG 1491
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1155 GTGATGGCAGAACTTGACCAGAGACTTCGGAGACTCAACTCTCTGAAAGAAAGTGGTAAG 1214
Query 1492 AGCACATAAATAAAAAAGAACTGTTGGG 1519
|||||||||| ||||| |||||||||||
Sbjct 1215 AGCACATAAACAAAAA-GAACTGTTGGG 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5