BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07900.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478129 jgi|Araly1|478129|fgenesh2_kg.3__830__AT3G07900.1 2843 0.0
> Ahg478129 jgi|Araly1|478129|fgenesh2_kg.3__830__AT3G07900.1
Length=1816
Score = 2843 bits (1539), Expect = 0.0
Identities = 1733/1823 (95%), Gaps = 28/1823 (2%)
Strand=Plus/Plus
Query 1 GCCGTAACTAATTGTCTCCAAAATCTCTCATTTCGTCTGTTTAAAAGTTGTGATGGGAAC 60
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GCCGTAACTAATTTTCTCAAAAATCTCTCATTTCGTCTGTTTGAAAGTTGTGATGGGAAC 60
Query 61 ATGGAAGAAC-AAAAACAGTAATAAGAAGAACAGAGTTAGCTACATTTCAGTCCCAGCTC 119
||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 61 ATGGAAG-ACGAAAAACAGTAATAAGAAGAAGAAAGTTAGCTACATTTCAGTCCCAGCTC 119
Query 120 AGATCATAAACTCAGTTTCATCATCATCTTTACACAA-ATTTCTCGATAATAAATCTTCA 178
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 120 AGATCATAAACTCAGTTTCATCATCATCTTTACA-AAGTTTTCTCGATAACAAATCTTC- 177
Query 179 AAGAAGAACACAAGCAAGTTCTTCTTCAATCTCAGAAACCCAAAGCTCTGGGCTTTCTCT 238
||| | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ---AAG----C-A--AA-TTCTTCTTCAATCTCAGAAACCCAAAGCTCTGGGCTTTCTCT 226
Query 239 CTCTTCTTACTTTCTATTTTGGGGATATCATTAAGACTCGGTCTTTGTCTTTCTCATTTC 298
||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||
Sbjct 227 CTCTTCTTACTTTCTATTTTGGGAATATCATTAAGACTCGGTCTTTGTC-TT-TC--TTC 282
Query 299 GGTTCTGGCGATCACGAAAGTCAACTTCAGAGTTCAGATTCTAATGGCTCGCCCAAATCC 358
| |||| ||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 283 ----C-GGCGTTCACGAAAGTCAACTTCAGAGCTCGGATTCTAATGGGTCACCCAAATCC 337
Query 359 CATATGGGTTTTGCGTATATCCGATCAAGCACTACTCAAGTTGAGATTTCAAACGCAAAG 418
||| ||||||||||||||| |||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 338 CATCTGGGTTTTGCGTATAGCCGATCAAACACCACTCAAGTTGAGATTTCGAACGCCAAG 397
Query 419 GATCGATCTTTAGATATGGGAGTGGAGAAAAATGAAACCTTTGGTGGTCACCAATCACAT 478
|||||||||||||||| ||| ||||||||||||||||||||||||||| | || ||||||
Sbjct 398 GATCGATCTTTAGATACGGGTGTGGAGAAAAATGAAACCTTTGGTGGTGATCAGTCACAT 457
Query 479 TTGATCATCC-CTAATGGAAATGGACATGATGATAAGAATTATGACTTCTGGAAACAGCC 537
||||||| || ||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 458 TTGATCA-CCTCTAGTGGAAATGTACATGATGATAAGAATTATGAGTTCTGGAAACAGCC 516
Query 538 TGATGGATTAGGTTACAAGCCTTGCTTAGATTTCAGCATTGAATACAGAAGAGAGAGTAA 597
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 517 TGATGGATTAGGTTACAAGCCATGCTTAGATTTCAGCATTGAATACAGAAGAGAGAGTAA 576
Query 598 GAAGATTCTTGTAGAGAGGAGAAAGTATCTGATGGTGGTTGTCTCTGGTGGGTTGAATCA 657
||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 577 GAAGATTGTTGCAGAGAGGAGAAAGTATCTGATGGTGGTAGTTTCTGGTGGGTTGAATCA 636
Query 658 GCAGAAGATTCAGATTGTTGATGCAGTTGTGATTGCGAGGATTCTAGGTGCTGTTCTTGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GCAGAAGATTCAGATTGTTGATGCAGTTGTGATTGCGAGGATTCTAGGTGCTGTTCTTGT 696
Query 718 TGTCCCAATATTGCAAATCAATCTCATTTGGGGTGACGAGAGCGAGTTTTCAGATATATT 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 697 TGTCCCAATATTGCAAATCAATCTCATTTGGGGTGACGAGAGTGAGTTTTCAGATATTTT 756
Query 778 TGATTTAGAGCAATTCAAGAGTGTTTTAGCAAATGATGTGAAGATTGTTTCGTTGCTTCC 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 757 TGATTTAGAGCAATTCAAGAGTGTTTTAGTAAATGATGTGAAGATTGTTTCGTTGCTTCC 816
Query 838 CGCAAGTAAAGTAATGACTAGACCATCGGAAGATGGTAGTATGCCCTTTAATGCCTCCCC 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 817 CGCAAGTAAAGTAATGACTAGACCATCAGAAGATGGTAGTATGCCCTTTAATGCCTCCCC 876
Query 898 TCAATGGATCCGTTCGCACTATCCAAAGCGTTTCAATAGGGAAGGTGTTCTGCTTTTAAG 957
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 877 TCAATGGATCCGTTCGCACTATCTAAAGCGTTTCAATAGGGAAGGAGTTCTGCTTTTAAG 936
Query 958 GAGATTGGATTCAAGATTGTCTAAAGACTTACCCTCTGATCTCCAGAAGCTCCGTTGTAA 1017
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GAGATTTGATTCAAGATTGTCTAAAGACTTACCCTCTGATCTCCAGAAGCTCCGTTGTAA 996
Query 1018 GGTAGCATTTGAAGCTCTAAAGTTTTCGCCACGAGTTATGGAAATGGGGACGAAGCTTGC 1077
||||||||||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||
Sbjct 997 GGTAGCATTTGAAGCACTAAAATTTTCGCCACGGGTTTTGGATATGGGGACGAAGCTTGC 1056
Query 1078 AGAGAGGATGAGGAGCAAAGGGCCTTACATTGCGTTGCATCTTCGGATGGAGAAAGATGT 1137
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1057 AGAGAGGATGAGGAGCAAAGGACCTTACATTGCGTTGCATCTTCGGATGGAGAAAGATGT 1116
Query 1138 GTGGGTGAGAACAGGCTGCCTTTCTGGTTTGAGCTCAAAGTATGATGAGATTGTGAACAT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1117 GTGGGTGAGAACAGGCTGCCTTTCTGGTTTGAGCTCAAAGTATGATGAGATTGTTAACAT 1176
Query 1198 TGAAAGGATTAAGCGGCCTGAGCTCTTAACAGCCAAATCTAGTATGACATCTAACGAGAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGAAAGGATTAAGCGGCCTGAGCTCTTAACAGCCAAATCTAGTATGACATCTAACGAGAG 1236
Query 1258 AAAACTCGCGGGTCTCTGTCCGTTAAATGCCAAGGAAGTAACAAGGCTGCTTAGAGCTCT 1317
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1237 GAAACTCGCGGGTCTCTGTCCATTAAATGCCAAGGAAGTAACAAGACTGCTTAGAGCTCT 1296
Query 1318 TGGAGCACCAAGAGATGCGAGGATCTATTGGGCGGGAGGGGAACCGCTCGGTGGAAAGGA 1377
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1297 TGGAGCACCAAGAGATGCGAGGATCTATTGGGCGGGAGGTGAACCGCTTGGCGGAAAGGA 1356
Query 1378 AGCTTTGAAACCGTTAACAAGTGAATTCCCACATCTCTACAACAAGTACGATATTGCGTT 1437
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1357 AGCTTTGAAACCGTTAACAAGTGAATTCCCACATCTCTACAACAAATATGATATTGCGTT 1416
Query 1438 GCCTCTTGAACTCAAACCTTTCGCAAAACGAGCTTCGATAATGGCAGCAATCGACTATAT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GCCTCTTGAACTCAAACCTTTCGCAAAACGAGCTTCGATAATGGCAGCAATCGACTATAT 1476
Query 1498 AGTGTGTAAGGAGAGTGATGTGTTTATGGCATCTCATGGAGGGAACATGGGCCACGCAAT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 AGTGTGTAAGGAGAGTGATGTGTTTATGGCATCTCATGGAGGGAACATGGGCCACGCAAT 1536
Query 1558 TCAGGGGCACAGGGCTTATGAAGGACACAAGAAGATTATAACGCCAAACAAAAGACATAT 1617
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1537 TCAGGGGCACAGGGCTTATGAAGGACACAAGAAGATTATAACACCAAACAAAAGGCATAT 1596
Query 1618 GCTACCATACTTTGTGAACTCATCATTGACTGAAACAGAGTTTGAGAAGATGATAAAGAA 1677
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1597 GCTCCCATACTTTGTGAACTCATCAATGACTAAAACAGAGTTTGAGAAGATGATAAAGAA 1656
Query 1678 ATTACACAGACAATCTCTAGGACAGCCAGAACTAAGGATTAGCAAAGCTGGAAGAGATGT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 ATTACACAGACAATCTCTAGGACAGCCAGAACTAAGGATTAGCAAAGCTGGAAGAGATGT 1716
Query 1738 TACAAAGTACCCTGTTCCTGAGTGTATGTGCAATCAATCCAACACCACTATTTAGAACTT 1797
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1717 TACAAAGTATCCTGTTCCTGAGTGTATGTGCAATCAATCCAACACCACTATTTAGAGCTT 1776
Query 1798 CTTCTTTTTTGCACATATGGTTT 1820
||| ||||||| |||||||||||
Sbjct 1777 CTT-TTTTTTGAACATATGGTTT 1798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5