BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07910.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928475 jgi|Araly1|928475|scaffold_300932.1                        377    4e-104
  Ahg928476 jgi|Araly1|928476|scaffold_300933.1                        128    4e-29 


> Ahg928475 jgi|Araly1|928475|scaffold_300932.1
Length=266

 Score =  377 bits (204),  Expect = 4e-104
 Identities = 235/250 (94%), Gaps = 2/250 (1%)
 Strand=Plus/Plus

Query  112  AAGAAGATGGCGAAAAATAGCTGTTTGGCCAAAATCACTGCCGGAGTTGCCGTTGGCGGC  171
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15   AAGAAGATGGCGAGAGATAGCTGTTTGGCCAAAATCACTGCCGGAGTTGCCGTTGGCGGC  74

Query  172  GCTCTTGGCGGCGCAGTAGGTGCTGTCTATGGAACTTACGAGGCGATTAGAGTCAAGGTT  231
            || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  75   GCACTTGGCGGCGCAGTAGGTGCTGTCTATGGAACGTACGAGGCGATTAGATTCAAGGTT  134

Query  232  CCGGGGCTTCAT-AAGGTTAGATTCATTGGGCAAACTACCCTCAGCAGCGCAGCAATTTT  290
            || |||||| || |||||||||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct  135  CCTGGGCTT-ATGAAGGTTAGATACATTGGGCAAACTACTCTCGGCAGCGCAGCAGTTTT  193

Query  291  CGGGCTTTTTCTAGGTGCGGGCAGTTTGATTCACTGTGGAAAAGGCTACTGATTCCCTTA  350
            |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct  194  CGGGCTTTTTCTAGGTGCGGGCAGTTTGATACATTGTGGCAAAGGCTACTGATTCCCTTA  253

Query  351  CATTGGTTTA  360
            ||||||||||
Sbjct  254  CATTGGTTTA  263


> Ahg928476 jgi|Araly1|928476|scaffold_300933.1
Length=296

 Score =  128 bits (69),  Expect = 4e-29
 Identities = 88/97 (91%), Gaps = 1/97 (1%)
 Strand=Plus/Minus

Query  1   AAAATCAATCCATTGCGTAAGCAAAAACTTCAAAGTTAAAAACCTTAAAAGCGGCGAGGG  60
           |||| |||||||| | | ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct  96  AAAACCAATCCATCGTGCAAGCAAAAACTTCGAGGTTAAAACCCTTAAAAGCGGCGAGGG  37

Query  61  CAACCGTAAAAAACTATTCTCCGACACAAGAAACGAA  97
           |||||||||||| | ||||||||||||||||||||||
Sbjct  36  CAACCGTAAAAACC-ATTCTCCGACACAAGAAACGAA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5