BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07920.1

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg340977 jgi|Araly1|340977|fgenesh1_pg.C_scaffold_3000740           647    0.0  


> Ahg340977 jgi|Araly1|340977|fgenesh1_pg.C_scaffold_3000740
Length=519

 Score =  647 bits (350),  Expect = 0.0
 Identities = 434/474 (92%), Gaps = 8/474 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTGATGAAAGTAATGAGAACAAGAAAGAAGTGAAGGATGATGAGCAAGAAATTCTT  60
            |||||||||||||||||||||| |||| ||||||||||| |||||   ||||||||||||
Sbjct  1    ATGGCTGATGAAAGTAATGAGATCAAGGAAGAAGTGAAGCATGAT---CAAGAAATTCTT  57

Query  61   CGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAATTTGGCTTCTT  120
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  58   CGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAGTTTGGCTTCTT  117

Query  121  ACAATTATATGGCCACCACAAGTTCTTCGTGAAGAGACAGCGAAAGGCACAAAGAAGACA  180
            |||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||||||||
Sbjct  118  ACAATTATATGGCCACCACAAGTTCTTCGTGAAGGGACAGAGACAGGGACACAGAAGACA  177

Query  181  GTCTTTGTCAACTTTATGGACTATTGCAAGACGATGCATCGAAACCCTGATCATGTTATG  240
            |||||||||||||||||||||||||||||||| |||| ||||  ||| ||||||||||||
Sbjct  178  GTCTTTGTCAACTTTATGGACTATTGCAAGACCATGCGTCGACCCCCAGATCATGTTATG  237

Query  241  GCGT-TCTTGCTTGCTGAGCTGGGTACTAGGGGTAAACTTGATGATCAGCAAAGGTTGGT  299
            || | ||||||||| |||| ||||||||||||||| ||||||||  ||||||||||||||
Sbjct  238  GC-TATCTTGCTTGGTGAGATGGGTACTAGGGGTACACTTGATGGGCAGCAAAGGTTGGT  296

Query  300  TGTTAGGGGGAGATTTACACAGAGGGACTTTGAATCGTTATTACGAGGATATATCCTTGA  359
            ||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||
Sbjct  297  TGTTAGGGGGAGATTCACACAGAAGCACTTTGAATCGTTATTACGACGATATATCCTTGA  356

Query  360  CTACGTCATGTGCAT-TCCTTGCAAGAGCACAGAGGCAATTCTTTCAAAGGAGAATCGTC  418
            ||||||||||||| | |  ||||||||||||||| |||||| |||||| |||||||||||
Sbjct  357  CTACGTCATGTGC-TCTGGTTGCAAGAGCACAGACGCAATTATTTCAAGGGAGAATCGTC  415

Query  419  TCTTCTTTTTGAGATGTGGAAAGTGTGGATCAGGACGACCTGTGG-CGCCAATC  471
            ||| |||||||||||||| |||||||||||||| |||||| |||| ||||||||
Sbjct  416  TCTCCTTTTTGAGATGTGAAAAGTGTGGATCAGAACGACCAGTGGGCGCCAATC  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31908881529


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5