BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07930.3
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928478 jgi|Araly1|928478|scaffold_300935.1 1687 0.0
Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025 159 4e-38
> Ahg928478 jgi|Araly1|928478|scaffold_300935.1
Length=1348
Score = 1687 bits (913), Expect = 0.0
Identities = 1216/1353 (90%), Gaps = 57/1353 (4%)
Strand=Plus/Plus
Query 147 GGACGATGATAGTTCAGTGATGATGACTCGTCGGAGACCCGACTCCGATTTTATCGAGGT 206
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GGACGATGGTAGTTCAGTGATGATGACTCGTCGGAGACCCGACTCCGATTTTATCGAGGT 61
Query 207 AAGTGATGAGAATCGCTCGTTTGCTTTATTTAAGGAGGAT---GATGaaaaaaaTCGTGA 263
||||||||||||||||||||| | |||||||||||||||| |||||||||| ||| ||
Sbjct 62 AAGTGATGAGAATCGCTCGTTGGGTTTATTTAAGGAGGATGAAGATGAAAAAATTCGAGA 121
Query 264 TTTGGGTTTAG-T--TGA---TG--A-T-G----G-TTCCACAAATTTGGTTCTTCAATG 308
||||||||||| | ||| || | | | | |||||| |||||| ||||||||||
Sbjct 122 TTTGGGTTTAGTTGATGAGTCTGAAACTAGACATGCTTCCACTAATTTGCTTCTTCAATG 181
Query 309 TCATGAT-G-A-TGGTTG-TTCC-CTA-GAGAAG-G--ATA-------AT-A-G-C-AA- 347
||||||| | | | |||| ||| | | || ||| | ||| | | | | ||
Sbjct 182 TCATGATGGTAGTTGTTGCCTCCACAAGGATAAGAGCAATAGCTTTGTTTCATGTCGAAG 241
Query 348 TAGCTTGGATGATTTGTTCTCTGGGTTTGTTTATAAAGGTGTGAGGAGGAGGAAAAGGGA 407
| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 242 AAACTTGGATGATTTGTTCTCTGGGTTCGTTTATAAGGGTGTGAGGAGGAGGAAAAGGGA 301
Query 408 TGACTTTGGAAGTATAACAACGAGTAATCTTGTT-TCTCCTCAAATTGCTGATGATGATG 466
|||||||||||||| |||||| |||| |||| || |||||||||||||| ||||||||
Sbjct 302 TGACTTTGGAAGTAAAACAACAAGTAGTCTT-TTGTCTCCTCAAATTGC---TGATGATG 357
Query 467 ATGATAGTGTTTCTGATTCACATATTGAAAGGCAAGAATGCAGTGAATTTCATGTTGAAG 526
||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 358 ATGATAGTGTTGCTGAATCACATATTGAAAGGCAAGACTGCAGTGTATTTCATGTTGGAG 417
Query 527 TAAGAAGAGTTTCTCCATACTTTCAGGGATCTACTGTTTCACAACAGTCCAAAGAAGGGT 586
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||
Sbjct 418 TAAGAAGAGTTTCTCCATACTTCCAGGGATCAACTGTTTCACAACAGTCTAAAGAAGAGT 477
Query 587 GTGATTCTGATAGTGTTTGTTC-CAAA---GAAG-GA-TGCAGCAAAGTTCAAGCTAAAG 640
|||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||
Sbjct 478 GTGATTCTGATAGTGTTTGTTCTCAAAGTGGAAGAAATTGCAGCAAAGTTCAAGCTAAAG 537
Query 641 TCCCACGAGTTTCTCCATACTTCCAGGCATCAACTATTTCACAGTGTGATTCTGACATTG 700
||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 538 TCCCAATAGTTTCTCCATACTTCCAGTCATCAACTATTTCACAATGTGATTCTGACATTG 597
Query 701 TTTCTTCTTCTCAAAGTGG-AAGAAATTATCGGAAAGGAAGCAGCAAACGTCAAGTTAAA 759
||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||| ||||
Sbjct 598 TTTCTTCTTCTCAAAGTGGAAAG-AATTATAGGAGAGGAAGCAGCAAACGTCAAGCTAAA 656
Query 760 GTCAGAAGAGTTTCGCCATATTTCCAGGAATCAACTGTTTCAGAACAGCCAAACCAAG-- 817
||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 657 GTCCGAAGAGTTTCGCCTTATTTCCAGGAATCAACTGTTTCAGAACAGCCAAGCCAGGCT 716
Query 818 -CTCCTAAAGGTTTGCGTAACTATTTTAAGGTTGTGAAAGTTTCAAGATATTTCCATGCT 876
|||||| || ||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 717 CCTCCTAGAGATTTGCGTCAGTATTTTAAGGTCGTGAAAGTTTCAAGATATTTCCATGCG 776
Query 877 GATGGAATCCAAGTCAATGAATCACAAAAGGAGAAATCAAGAAATGTGAGGAAAACTCCT 936
|||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 777 GATGGAATTCAAGTCAATGAATCACAAAAGGAGAAATCAACAAGGGTGAGAAAAACTCCT 836
Query 937 ATTGTGAGCCCTGT-ACTCTCGCTTTCTCAAAAGACCGATGATGTATACCTGCGAAAAAC 995
||||||||||| | ||||||||||||||| | ||||||||| | ||||| ||| |||||
Sbjct 837 GTTGTGAGCCCT-TCACTCTCGCTTTCTCAGAGGACCGATGAGGCATACCAGCGGAAAAC 895
Query 996 GCCGGATAACACATGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTG 1055
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCCGGATAAAACGTGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTG 955
Query 1056 GCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGGTGCACA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGGTGCACA 1015
Query 1116 GACGCGGGGAGTGATATCAGACTTGTTTGGATTGTGTACTGATGCAAAGACTGCAACAGA 1175
|||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||
Sbjct 1016 GACGCGGGGAGTGATAGCAGATTTGTTTGCATTGTGTCCTGATGCAAAGACTGCAACAGA 1075
Query 1176 AGTTAAAGAAGAGGAGATAGAGAATCTAATAAAACCTCTTGGATTACAAAAGAAGAGAAC 1235
|||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1076 AGTTGAAGAAAAGGAGATAGAGAGTCTAATAAAACCTCTTGGACTACAAAAGAAGAGAGC 1135
Query 1236 CAAAATGATTCAACGGTTGTCTCTAGAGTATCTTCAAGAGAGCTGGACTCATGTCACTCA 1295
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1136 CAAAATGATTCAACGGTTTTCTCTCGAGTATCTTCAAGAGAGCTGGACTCATGTCACTCA 1195
Query 1296 ACTGCATGGCGTTGGAAAGTATGCAGCGGATGCGTATGCGATATTCTGTAACGGGAATTG 1355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ACTTCATGGCGTTGGAAAGTATGCAGCGGATGCGTATGCGATATTCTGTAACGGGAATTG 1255
Query 1356 GGATCGCGTGAAGCCTAATGATCATATGCTAAACTATTACTGGGACTACCTCAGGATTCG 1415
|||||| ||||||||| ||||||||||||||||||| |||||||| | |||||||||||
Sbjct 1256 GGATCGTGTGAAGCCTGATGATCATATGCTAAACTACTACTGGGAATTTCTCAGGATTCG 1315
Query 1416 GTATAAATTATGAATGAGAAGGTACAAGTATAT 1448
||||||||||||| || ||||||||||||||||
Sbjct 1316 GTATAAATTATGAGTGGGAAGGTACAAGTATAT 1348
> Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025
Length=408
Score = 159 bits (86), Expect = 4e-38
Identities = 121/137 (88%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 713 AAAGTGG-AAGAAATTATCGGAAAGGAAGCAGCAAACGTCAAGTTAAAGTCAGAAGAGTT 771
||||||| ||| |||||| ||| |||||||||||||||||||| ||||||| ||||||||
Sbjct 185 AAAGTGGAAAG-AATTATAGGAGAGGAAGCAGCAAACGTCAAGCTAAAGTCCGAAGAGTT 243
Query 772 TCGCCATATTTCCAGGAATCAACTGTTTCAGAACAGCCAAACCAAGCTCCTAA-AG-G-T 828
|||||||||||||||||||||||||||||| ||||||||| ||| |||||| || | |
Sbjct 244 TCGCCATATTTCCAGGAATCAACTGTTTCAAAACAGCCAAGCCAGGCTCCTCCTAGAGAT 303
Query 829 TTGCGTAACTATTTTAA 845
|||||| | ||||||||
Sbjct 304 TTGCGTCAGTATTTTAA 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5