BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07940.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478135 jgi|Araly1|478135|fgenesh2_kg.3__836__AT3G07940.1 2538 0.0
> Ahg478135 jgi|Araly1|478135|fgenesh2_kg.3__836__AT3G07940.1
Length=1550
Score = 2538 bits (1374), Expect = 0.0
Identities = 1501/1561 (96%), Gaps = 14/1561 (1%)
Strand=Plus/Plus
Query 2 aaaaaaTAAAATTCAACTCATCTCTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 61
|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAA-AAAATTCAACTGATCTTTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 59
Query 62 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGTCCCTTGTTTAC-G-ACTCTTGTT 119
|||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||
Sbjct 60 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGCCCCTTGTTTACGGTATTCTTGTT 119
Query 120 GTTTGAAAATGCTATGGCTCGTGAGGGGATGTTGTTTTGATTTTGGGAAAGTCTTGTTTG 179
|||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 120 GTTTAAAAATGCTATGGCTCTTGAGGGGATGTTGTCTTGATTTTGGGAAAATCTTGTTTG 179
Query 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTCTTGTCTCGGCTCTGCTTCGAAA 239
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTATTGTCTCGGCTCTGGTTCGAAA 239
Query 240 TGTCTCTCGGCCAAGAAAATGTTGATCCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 240 TGTCTCTAGGCCAAGAAAATGTCGAACCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299
Query 300 ATGAACTTTTATGTTCTGAGACACCCAAATGGACTCCTCTTAGGGTTGAAGATTTGCAAA 359
|||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||
Sbjct 300 ATGAACTTTTATGTTCAGAGACACCCAAGTGGACTCCTCTTA------AGGATTTGCAAA 353
Query 360 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 413
Query 420 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTTGGTGTATTTA 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 414 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTCGGTGTATTTA 473
Query 480 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 533
Query 540 CAGTAAAGCTAGACGAGTGGACAGATGATCAGGTTGACATGCTTGTAGGTTACGGTGGAA 599
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 534 CAGTAAAGCTAGACGAGTGGACAGATGATCAAGTTGACATGCTTGCAGGGTACGGTGGAA 593
Query 600 ACACGGCAGTGAACGAAAGATTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 659
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 594 ACACGGCAGTGAACCAGAGATTCGAGGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 653
Query 660 CAGATTCTACTAATGAGGAACGAAATGATTTCATTAGaaaaaaaTATGAGCAGCACCAGT 719
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 654 CAGATTCTACTAATGAGGAACGCAATGATTTCATCAGAAAAAAATATGAGCAGCACCAGT 713
Query 720 TTATGGATCCAAAGGATGGTGCTTTGTGCACTTATCAGCAGCCTAGCAGAACAAACACTT 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 714 TTATGGATCCAAAGGATGGTGCTTTGTGCCCTTATCAGCAGCCTAGCAGAACAAATACTT 773
Query 780 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 833
Query 840 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 893
Query 900 TGGCAGGTATGGTTGAGTTTGTGGGGTTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 894 TGGCAGGTATGGTTGAGTTTGTGGGATTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 953
Query 960 TTGCGGTTCGAGACGTGATGACCAGCGATCCTTATGTTATCCTTGCTCTTGGCCAACAAT 1019
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 954 TTGCAGTTCGAGACGTGATGACCAGCGATCCTTATGTTATTCTTGCTCTTGGCCAGCAAT 1013
Query 1020 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCTGTGTGGAATGAGACGCTAATGC 1079
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1014 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCGGTGTGGAATGAGACGCTAATGC 1073
Query 1080 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1133
Query 1140 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1193
Query 1200 AAGCATACGAGACATCGAGCATAAAGGAACCGATGCAGCTGGGAAGTTGGGTGGCGAGCA 1259
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1194 AAGCATACGAGACATCGAGCATAAAGGAACCAATGCAGCTGGGAAGTTGGGTGGCGAGCA 1253
Query 1260 AAGAGAACACATTGGTGAGTGATGGCATAATCTTACTTGAAGACGGGAAAGTGAAACAAG 1319
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 1254 AAGAGAACACATTGGTGAGTGATGGCATAATATCACTTGAAGAAGGGAAAGTGAAACAAG 1313
Query 1320 ACATTTCACTTAGGCTACAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1379
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ACATATCACTTAGGCTTCAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1373
Query 1380 TTCCTCTCACTCAATGATGATACTTTCTTCTTCATCCCTCTTCtttttttttttCTTTAA 1439
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1374 TTCCTCTCACTCAATGATGATACTTTCTTCTTCATCCCTCTTCTTTCTTTTT--CTTGAA 1431
Query 1440 AAGATTTATTTCTAAATTTATAGTGAAGAAA-AGATGCTGCTACTTTCTTGTTGTTCCAC 1498
||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 1432 AAGATTTATTTTTAAATTTATAGTGAA-AAAGAGATTCTGCTACTTTCTTGTTGTTCCAC 1490
Query 1499 CTCAAACAAAACCTCTGTaaaaaaaCAACACCATGATTTGATTTGATGATTCTTCAGAAC 1558
|||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 1491 CTCAAACAAACCCTATGTATAAAAA-AACACCATGATTTGATTTGATGATTCTTCAAAAC 1549
Query 1559 C 1559
|
Sbjct 1550 C 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5