BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07950.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928482 jgi|Araly1|928482|scaffold_300939.1 1618 0.0
> Ahg928482 jgi|Araly1|928482|scaffold_300939.1
Length=957
Score = 1618 bits (876), Expect = 0.0
Identities = 930/957 (97%), Gaps = 0/957 (0%)
Strand=Plus/Plus
Query 110 CTCTTGCTCAAGTCTGGAGACATGAGTTCTCCGGGAACGAGTATGTTCACCAATTTCACT 169
|||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTGTTCAAGTCCGGCGACATGAGTTCTCCGGGAACGAGTATGTTCACCAATTTCACT 60
Query 170 AAGCTCTGCAAAGGACTTGCCCTGGTACTTGTGGTGGGACACCTCGTGGTTCAGTTCATT 229
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTCTGCAAAGGACTTGCTCTGGTGCTTGTGGTGGGACACCTCGTGGTTCAGTTCATT 120
Query 230 CCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGGACTATTCCTTTTGCCTGGAAT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGGACTATTCCTTTTGCCTGGAAT 180
Query 290 CTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGGGTTGTCTTCAGCACCGTTTCT 349
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTGATAACAAGCGGCTATTTTGAACTCTCAGTTTATGGGGTTGTCTTCAGCACCGTTTCT 240
Query 350 CTCCTTTTTATGGGAAAGTTCCTGGAACCTGTCTGGGGTTCCACGGAGTTCCTTAAGTTC 409
||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 241 CTCCTCTTTATGGGGAAGTTTCTGGAACCTGTCTGGGGTTCCAAGGAGTTCCTTAAGTTC 300
Query 410 ATCTTTGTGGTGAACTTCCTTACGTATCTCTGTGTTTTCGTTACAGCCATTGCCTTATAC 469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 ATCTTTGTGGTGAACTTCCTTACGTATCTCTGTGTCTTCGTTACAGCCATTGCCTTATAC 360
Query 470 TACATAACGAGGCTGGAAGTTTACCTATATATGCCCTTTGCTGGTTTTCATGGTGTCTTG 529
|| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATATAACTAGGCTAGAAATTTACCTATATATGCCCTTTGCTGGTTTTCATGGTGTCTTG 420
Query 530 GCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAG 589
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAGGCCTTCTTGTCGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAG 480
Query 590 ATAAAAGCAAAGTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTTC 649
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 ATAAAAGCAAAGTGGTTGCCCTCAATTATGATAATTTTGTCAATAGCCTCAAGCTTCTTC 540
Query 650 ACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGTACATATATGGGCTGGTTA 709
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 ACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGCACATATATGGGCTGGTTA 600
Query 710 TACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGAC 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGAC 660
Query 770 TTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGGCCAGTAATTGACCCCATTGCCTTA 829
||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||||
Sbjct 661 TTTGCCTTCTCTACTTTCTTTCCTGAATTTCTCAGGCCCGTAATTGAACCTATTGCCTTA 720
Query 830 ATCTTTCACCGGATGCTTTGTGGAAGATCAAATGCCACCAGTGAAGACCATGATTATTCT 889
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 721 ATCTTTCACCGGATGCTTTGTGGACGATCAAATGCCACCAGTGAAGACCATGGTTATTCT 780
Query 890 ACCAGTGGTGCACCATTGCCAGGTTCTGATTCTGCTGAAGCATCCAGGAGGAGAGAAAGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACCAGTGGTGCACCATTGCCAGGTTCTGATTCTGCTGAAGCATCCAGGAGGAGAGAAAGA 840
Query 950 GGGGCAAGAGCTCTAGAGGAGAGACTAGGAACGGAAAGATTGGTTCCTGCAAGGAACAAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGGGCAAGAGCTCTAGAGGAGAGACTAGGAACGGAAAGATTGGTTCCTGCAAGGAACAAA 900
Query 1010 GATGAATTGCAGAGTGATGGTTTAGATAACGTATAAGTGGAGATTGCAATAAGCATT 1066
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 901 GATGAATTGCAGAGTGATGCTTTGGATAGCGTATAAGTGGAGATTGCAATAAGCATT 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5