BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07970.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903696 jgi|Araly1|903696|Al_scaffold_0003_824 2224 0.0
> Ahg903696 jgi|Araly1|903696|Al_scaffold_0003_824
Length=1320
Score = 2224 bits (1204), Expect = 0.0
Identities = 1280/1318 (97%), Gaps = 0/1318 (0%)
Strand=Plus/Plus
Query 1 ATGTATGAAAAGATCATAATCTTATCAGTATTTCTCTTAACATTTCTTCCTTCTTGTTTC 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTATGAAAAGATCATAATCATATCAGTATTCCTCTTAACATTTCTTCCTTCTTGTTTC 60
Query 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120
Query 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180
Query 181 GGTTATGCTCCTAGATCTTCTCCTCGATCTTTTAACGTCAACACTTTCGGTGCTAAAGCC 240
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 181 GGTTATGCTCCTGGATCTTCTCCTCGAGCTTTTAACGTCAACACTTTTGGTGCTAAAGCC 240
Query 241 AACGGGAACGACGATTCTAAGGCCTTCATGAAAGCTTGGGAAGCAGCTTGTTCGTCAACC 300
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 241 AACGGAAACGACGATTCTAAGGCATTCATGAAAGCCTGGGAAGCAGCTTGTTCATCGACT 300
Query 301 GGAATAGTTTACATTGTGGCTCCAAAGAATAGAGATTACATGCTTAAAGCGGTTACGTTC 360
|||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||| |||
Sbjct 301 GGAATAGTTTACGTTGTGGTTCCAAACAATAGAGATTACATGCTTAAATCGGTTACATTC 360
Query 361 TCTGGTCCATGTAAATCATCCTTGATTATTTTTAAGATTTACGGAAGGATTGAGGCATGG 420
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TCTGGTCCATGTAAATCAACCTTGATTATTTTTAAGATTTACGGAATGATTGAGGCATGG 420
Query 421 GAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCAATAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 AAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCGATAAC 480
Query 481 CTTCGAGTTGAAGGAGGTGGGCGCATCGACGGTAATGGACATATTTGGTGGCCAAAATCT 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTCGAGTTGAAGGAGGTGGCCGCATCGACGGTAATGGACATATTTGGTGGCCAAACTCT 540
Query 541 TGCAAAATCAACCCTCAACTTCCTTGCCTGGGAGCTCCAACGGCGGTTACGTTTGTGGAG 600
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 541 TGCAAAATCAACCCTCAACTTCCATGCCTGGGAGCTCCAACGGCCGTTACGTTTGTGGAG 600
Query 601 TGTAATAACTTGAGAGTAAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTAATAACTTGAGAGTTAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660
Query 661 TTTCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720
Query 721 CCTAACACTGATGGCATTCACGTTTCCGGAACTCAGAATATCTTAATTCAAGACTCTATC 780
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 721 CCTAACACCGATGGCATTCACGTTACCGGAACTCAAAATATCTTAATTCAAGACTCTATC 780
Query 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840
Query 841 GGCATTACATGCGGGCCTGGTCATGGAATCAGTATTGGAAGTTTGGGAGAAGATAACTCA 900
|||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GGCATTACGTGCGGCCCGGGTCATGGAATCAGCATTGGAAGTTTGGGAGAAGATAACTCA 900
Query 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960
Query 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020
Query 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080
Query 1081 GAAGCATGCCCCGAACAGAAATCCGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAATCATGTCCCGAACAGAAATCGGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140
Query 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAACATTCCATGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAGCATTCCATGT 1200
Query 1201 CGAGGAATATCAATGCAAAACGTTAAACTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CGAGGAATATCAATGCAAAACGTTAAATTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260
Query 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5