BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07970.1 Length=1382 Score E Sequences producing significant alignments: (Bits) Value Ahg903696 jgi|Araly1|903696|Al_scaffold_0003_824 2224 0.0 > Ahg903696 jgi|Araly1|903696|Al_scaffold_0003_824 Length=1320 Score = 2224 bits (1204), Expect = 0.0 Identities = 1280/1318 (97%), Gaps = 0/1318 (0%) Strand=Plus/Plus Query 1 ATGTATGAAAAGATCATAATCTTATCAGTATTTCTCTTAACATTTCTTCCTTCTTGTTTC 60 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGTATGAAAAGATCATAATCATATCAGTATTCCTCTTAACATTTCTTCCTTCTTGTTTC 60 Query 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120 Query 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180 Query 181 GGTTATGCTCCTAGATCTTCTCCTCGATCTTTTAACGTCAACACTTTCGGTGCTAAAGCC 240 |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 181 GGTTATGCTCCTGGATCTTCTCCTCGAGCTTTTAACGTCAACACTTTTGGTGCTAAAGCC 240 Query 241 AACGGGAACGACGATTCTAAGGCCTTCATGAAAGCTTGGGAAGCAGCTTGTTCGTCAACC 300 ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 241 AACGGAAACGACGATTCTAAGGCATTCATGAAAGCCTGGGAAGCAGCTTGTTCATCGACT 300 Query 301 GGAATAGTTTACATTGTGGCTCCAAAGAATAGAGATTACATGCTTAAAGCGGTTACGTTC 360 |||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||| ||| Sbjct 301 GGAATAGTTTACGTTGTGGTTCCAAACAATAGAGATTACATGCTTAAATCGGTTACATTC 360 Query 361 TCTGGTCCATGTAAATCATCCTTGATTATTTTTAAGATTTACGGAAGGATTGAGGCATGG 420 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 361 TCTGGTCCATGTAAATCAACCTTGATTATTTTTAAGATTTACGGAATGATTGAGGCATGG 420 Query 421 GAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCAATAAC 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 AAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCGATAAC 480 Query 481 CTTCGAGTTGAAGGAGGTGGGCGCATCGACGGTAATGGACATATTTGGTGGCCAAAATCT 540 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 481 CTTCGAGTTGAAGGAGGTGGCCGCATCGACGGTAATGGACATATTTGGTGGCCAAACTCT 540 Query 541 TGCAAAATCAACCCTCAACTTCCTTGCCTGGGAGCTCCAACGGCGGTTACGTTTGTGGAG 600 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 541 TGCAAAATCAACCCTCAACTTCCATGCCTGGGAGCTCCAACGGCCGTTACGTTTGTGGAG 600 Query 601 TGTAATAACTTGAGAGTAAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGTAATAACTTGAGAGTTAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660 Query 661 TTTCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTCCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720 Query 721 CCTAACACTGATGGCATTCACGTTTCCGGAACTCAGAATATCTTAATTCAAGACTCTATC 780 |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 721 CCTAACACCGATGGCATTCACGTTACCGGAACTCAAAATATCTTAATTCAAGACTCTATC 780 Query 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840 Query 841 GGCATTACATGCGGGCCTGGTCATGGAATCAGTATTGGAAGTTTGGGAGAAGATAACTCA 900 |||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 841 GGCATTACGTGCGGCCCGGGTCATGGAATCAGCATTGGAAGTTTGGGAGAAGATAACTCA 900 Query 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960 Query 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020 Query 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080 Query 1081 GAAGCATGCCCCGAACAGAAATCCGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1081 GAATCATGTCCCGAACAGAAATCGGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140 Query 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAACATTCCATGT 1200 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAGCATTCCATGT 1200 Query 1201 CGAGGAATATCAATGCAAAACGTTAAACTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1201 CGAGGAATATCAATGCAAAACGTTAAATTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260 Query 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51732798369 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5