BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07990.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478140 jgi|Araly1|478140|fgenesh2_kg.3__841__AT3G07990.1 2654 0.0
> Ahg478140 jgi|Araly1|478140|fgenesh2_kg.3__841__AT3G07990.1
Length=1717
Score = 2654 bits (1437), Expect = 0.0
Identities = 1637/1730 (95%), Gaps = 28/1730 (2%)
Strand=Plus/Plus
Query 9 TCCAAATCGTGAGGAAATCCAGAGTTCCATCAGATCTAACTCTCTTAGATCTGATTATCA 68
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2 TCCAAATCGTGAGGAAATTCAGAGTTCCATCAGATCTAACTCTCTTAGATCTGATTTTCA 61
Query 69 TGGATTACTCTTTCCTTCTAATCATTCTCTTACTCACAATCTCTACTTCATGTTGTGCTG 128
||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 62 TGGATTACTCTTTTCTTCTAATCATTCTCCTACTCACAATCTCTTCTTCA---TGTAATG 118
Query 129 CTCCTTCTTCTTATGTGGAAGAACAATTGAGAGACAGAATCAGTAACTTACCTGGACAAC 188
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 ------CTTCTTATGTGGAAGAACAATTGAGAGACAGAATCAGTAAGTTACCTGGACAAC 172
Query 189 CTAGTAATGTCGATTTTAGACAGTACTCAGGCTATGTCACTGTGCATGAAGAACGTGGAA 248
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 173 CTAGTAATGTCGATTTTAGACAGTACTCAGGCTATGTCACTGTGAATGAAGTACGTGGAA 232
Query 249 GAGCTTTGTTCTACTGGTTGGTCGAGTCTCCGTTGGCCCGTGACCCAAAGTCTAGACCTT 308
| ||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||
Sbjct 233 GGGCTTTGTTCTACTGGTTGGTCGAGTCTCCATCGACCCGTGACCCAAAGTTTAGACCTT 292
Query 309 TGGTTCTGTGGCTCAATGGTGGCCCTGGTTGTTCTTCTGTTGCTTATGGTGCTGCTGAAG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGGTTCTGTGGCTCAATGGTGGCCCTGGTTGTTCTTCTGTTGCTTATGGTGCTGCTGAAG 352
Query 369 AAATTGGACCTTTTCGTGTTGGTTCTGATGGCAAGACTCTTCATTCCAAACTTTATGCTT 428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 353 AAATTGGACCTTTTCGTGTTGGTTCTGATGGCAAGACTCTTCATCCCAAACTTTATGCTT 412
Query 429 GGAATAAATTGGCAAACTTGCTATTCTTGGAGTCTCCAGCTGGAGTTGGTTTCTCATATT 488
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGAATCAATTGGCAAACCTGCTATTCTTGGAGTCTCCAGCTGGAGTTGGTTTCTCATATT 472
Query 489 CAAACACAACTTCAGATCTTTACACAACCGGTGATCAGAGAACAGCTGAGGATTCGTACA 548
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 473 CAAACACAACTTCAGATCTTTACACAACCGGTGATCAGAGAACAGCTGAAGATTCGTATA 532
Query 549 TATTTCTTGTCAACTGGTTTGAGAGGTTTCCACAATACAAGCATAGGGAGTTTTACATTG 608
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 533 GATTTCTTGTCAACTGGTTTGAGAGGTTTCCACAATACAAACATAGGGATTTTTACATTG 592
Query 609 TTGGAGAAAGCTATGCAGGTCATTTTGTTCCTCAACTGTCTAAACTTGTCCATGAAAGGA 668
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 593 TTGGAGAAAGCTATGCAGGTCATTTTGTTCCTCAATTGTCTAAACTTGTCCATGAAAGAA 652
Query 669 ACAAGGGCTTCAAGAACCCGGCTATAAACCTCAAAGGTTTTATGGTGGGAAATGCTGTTA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACAAGGGCTTCAAGAACCCGGCTATAAACCTCAAAGGTTTTATGGTGGGAAATGCTGTTA 712
Query 729 CAGATGACTATCATGATTATATAGGAACATTTGAATACTGGTGGAATCACGGTCTCATAT 788
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 713 CAGATGACTATCATGATTATATAGGAACATTTGAATATTGGTGGAATCATGGTCTCATAT 772
Query 789 CCGATTCCACGTATCACCAACTAAAGACCGCGTGCTACTCAGTATCATCTCAGCATCCTT 848
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 773 CCGATTCAACGTATCACCAACTAAAGACCGCGTGCTACTCAGAATCATCTCAGCATCCTT 832
Query 849 CAATGCAGTGTATGGTGGCTCTGAGAAATGCCGAATTAGAGCAAGGAAATATCGATCCAT 908
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 833 CACTGCAGTGTATGGTGGCTCTGAGAAATGCCGAACTAGAGCAAGGAAATATCGATCCGT 892
Query 909 ATAGCATTTTCACCAAACCTTGCAACAGTACTGTGGCACTTAAGAGATTCTTAAAGGGTC 968
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 893 ATAGCATTTTCACCAAACCTTGCAACAGTACTGTAGCACTTAAGAGCTTCTTAAAGGGTC 952
Query 969 GCTACCCATGGATGTCAAGAGCTTATGATCCTTGTACAGAGAGATATTCGAATGTGTATT 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 GCTACCCATGGATGTCAAGAGCTTATGATCCTTGTACAGAGAGATATTCGAATGTGTACT 1012
Query 1029 TTAACCGCTTGGACGTTCAGAAGGCTCTCCACGCAAATGTCACTCGCTTATCTTACCCCT 1088
|||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1013 TTAACCGCGCGGACGTTCAGAAGGCTCTCCACGCAAACGTCACTCGCTTACCTTACCCCT 1072
Query 1089 GGAAAGCATGCAGTGACATTGTAGGAAGCTATTGGGACGATTCTCCTCTGTCTATGCTTC 1148
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1073 GGAAAGCATGCAGTGACATTGTAGGAAGCTATTGGGAAGATTCTCCTCTGTCTATGCTTC 1132
Query 1149 CTATATACAAAGAATTGATTACTGCAGGTCTCAAAATATGGGTCTTCAGTGGGGATACAG 1208
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1133 CTATATACAGAGAATTGATTACTGCAGGTCTCAAAATATGGATCTTCAGTGGGGATACAG 1192
Query 1209 ATGCTGTTGTTCCTATAACCGCTACCCGATACTCTGTAGATGCACTGAAGCTAGCAACCA 1268
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATGCGGTTGTTCCTGTAACTGCTACCCGATACTCTGTAGATGCACTGAAGCTAGCAACCA 1252
Query 1269 TCACGAACTGGTACCCGTGGTACGACCATGGCAAGGTAGGTGGGTGGAGTCAAGTTTACA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TCACGAACTGGTACCCGTGGTACGACCATGGCAAGGTAGGTGGGTGGAGTCAAGTTTACA 1312
Query 1329 AAGGACTTACATTAGTGACAGTAGCAGGAGCTGGTCATGAAGTGCCTCTACACCGTCCCC 1388
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1313 AAGGACTTACATTAGTGACAGTAGCAGGAGCTGGTCATGAAGTGCCTTTACACCGTCCCC 1372
Query 1389 GGCAAGCCTTTATTCTTTTCAGATCCTTTTTAGAGAGCAAACCAATGCCTATGACTTGAG 1448
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1373 GTCAAGCCTTTATTCTTTTCAGATCCTTTTTAGAGAGCAAACCAATGCCTATGACCTGAG 1432
Query 1449 ATAAAACCTTGAATGGACCTCTTCTCC-AACTTCCTGTTCTTTCTTCTTCATCATCAATA 1507
|| |||||||||||||||| |||||| || ||||| |||||||||||||||||||||||
Sbjct 1433 ATCAAACCTTGAATGGACCACTTCTCTGAA-TTCCTATTCTTTCTTCTTCATCATCAATA 1491
Query 1508 AACCAAAGTGTTTTTTCATTCACTGTCTTCCTCAATCCTCAGTGCATCCAAATTCAACAG 1567
|||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1492 AACCAA-GTGTTTCTTCATTCACTGTCTTCCTCAATCCTCAGTGCATCCAAACTCAACAC 1550
Query 1568 AAGACTGA--TTAGCTGTCTAGTACAAATCATAAGCAACTCTTCTTTCttttttttGTGT 1625
| |||| | ||| |||||||||||||||||||||| ||||||| || |||||| | ||
Sbjct 1551 ACGACTTAAATTATCTGTCTAGTACAAATCATAAGCCACTCTTCATT-TTTTTTG-G-GT 1607
Query 1626 AAAATCTTT--CTCAAACAGTTTCTCTATCTTTTCTCCATTATTGTAT----GC-TG--- 1675
||||||||| |||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1608 AAAATCTTTGTCTCAAACAGTTTTTCTATCTTTTCTCCATTATTGTATCATTGTATGATA 1667
Query 1676 CAAAGCAAAGTCTTTCA-ACTACGAATCATAATACTATAAGATAGTTTAT 1724
||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 1668 CAAAGCAAAGTCTTTCACACTACAAATCATAATACTATATGATAGTTTAT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5